Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Gm12818-201ENSMUST00000117562 1349 ntBASIC20.67■□□□□ 0.9
Nr1h4Q60641 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nr1h4Q60641 Gm7199-201ENSMUST00000118327 1485 ntBASIC20.67■□□□□ 0.9
Nr1h4Q60641 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Nr1h4Q60641 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Nr1h4Q60641 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nr1h4Q60641 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Nr1h4Q60641 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Nr1h4Q60641 Mir3960-201ENSMUST00000198213 73 ntBASIC20.66■□□□□ 0.9
Nr1h4Q60641 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nr1h4Q60641 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Nr1h4Q60641 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Nr1h4Q60641 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nr1h4Q60641 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nr1h4Q60641 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nr1h4Q60641 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nr1h4Q60641 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC20.65■□□□□ 0.9
Nr1h4Q60641 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nr1h4Q60641 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Nr1h4Q60641 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC20.64■□□□□ 0.9
Nr1h4Q60641 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Nr1h4Q60641 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC20.64■□□□□ 0.89
Nr1h4Q60641 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Nr1h4Q60641 AC154454.1-201ENSMUST00000225253 216 ntBASIC20.64■□□□□ 0.89
Nr1h4Q60641 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Nr1h4Q60641 Gm9910-201ENSMUST00000195385 1550 ntBASIC20.63■□□□□ 0.89
Nr1h4Q60641 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC20.63■□□□□ 0.89
Nr1h4Q60641 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
Nr1h4Q60641 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nr1h4Q60641 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Nr1h4Q60641 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nr1h4Q60641 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nr1h4Q60641 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nr1h4Q60641 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Nr1h4Q60641 Terc-201ENSMUST00000082862 423 ntBASIC20.62■□□□□ 0.89
Nr1h4Q60641 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
Nr1h4Q60641 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nr1h4Q60641 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nr1h4Q60641 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Nr1h4Q60641 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Nr1h4Q60641 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Nr1h4Q60641 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Nr1h4Q60641 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Nr1h4Q60641 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Nr1h4Q60641 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nr1h4Q60641 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nr1h4Q60641 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nr1h4Q60641 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Nr1h4Q60641 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nr1h4Q60641 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
Nr1h4Q60641 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Nr1h4Q60641 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Nr1h4Q60641 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Nr1h4Q60641 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nr1h4Q60641 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nr1h4Q60641 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nr1h4Q60641 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Nr1h4Q60641 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Nr1h4Q60641 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.59■□□□□ 0.89
Nr1h4Q60641 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Nr1h4Q60641 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Nr1h4Q60641 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Nr1h4Q60641 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Nr1h4Q60641 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Nr1h4Q60641 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Nr1h4Q60641 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Nr1h4Q60641 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC20.58■□□□□ 0.89
Nr1h4Q60641 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Nr1h4Q60641 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
Nr1h4Q60641 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Nr1h4Q60641 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Nr1h4Q60641 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Nr1h4Q60641 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Nr1h4Q60641 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Nr1h4Q60641 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Nr1h4Q60641 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Nr1h4Q60641 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nr1h4Q60641 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nr1h4Q60641 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC20.56■□□□□ 0.88
Nr1h4Q60641 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nr1h4Q60641 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC20.56■□□□□ 0.88
Nr1h4Q60641 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nr1h4Q60641 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Nr1h4Q60641 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Nr1h4Q60641 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
Nr1h4Q60641 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC20.55■□□□□ 0.88
Nr1h4Q60641 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Nr1h4Q60641 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Nr1h4Q60641 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Nr1h4Q60641 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Nr1h4Q60641 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nr1h4Q60641 Gm45364-201ENSMUST00000210883 159 ntBASIC20.54■□□□□ 0.88
Nr1h4Q60641 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Nr1h4Q60641 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nr1h4Q60641 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC20.53■□□□□ 0.88
Nr1h4Q60641 AC153524.1-201ENSMUST00000220436 1935 ntBASIC20.53■□□□□ 0.88
Nr1h4Q60641 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC20.53■□□□□ 0.88
Nr1h4Q60641 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Nr1h4Q60641 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Nr1h4Q60641 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC20.53■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 13.3 ms