Protein–RNA interactions for Protein: Q5R1H8

Trav8d-1, T cell receptor alpha variable 8D-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-1Q5R1H8 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav8d-1Q5R1H8 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav8d-1Q5R1H8 Gm5987-201ENSMUST00000196433 1151 ntBASIC17.71■□□□□ 0.43
Trav8d-1Q5R1H8 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav8d-1Q5R1H8 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav8d-1Q5R1H8 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trav8d-1Q5R1H8 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav8d-1Q5R1H8 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav8d-1Q5R1H8 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav8d-1Q5R1H8 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Trav8d-1Q5R1H8 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trav8d-1Q5R1H8 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trav8d-1Q5R1H8 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Trav8d-1Q5R1H8 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trav8d-1Q5R1H8 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trav8d-1Q5R1H8 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trav8d-1Q5R1H8 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav8d-1Q5R1H8 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav8d-1Q5R1H8 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trav8d-1Q5R1H8 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
Trav8d-1Q5R1H8 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav8d-1Q5R1H8 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trav8d-1Q5R1H8 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav8d-1Q5R1H8 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Trav8d-1Q5R1H8 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Trav8d-1Q5R1H8 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav8d-1Q5R1H8 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
Trav8d-1Q5R1H8 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC17.67■□□□□ 0.42
Trav8d-1Q5R1H8 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav8d-1Q5R1H8 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC17.66■□□□□ 0.42
Trav8d-1Q5R1H8 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Trav8d-1Q5R1H8 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Trav8d-1Q5R1H8 Notumos-201ENSMUST00000151998 2659 ntBASIC17.65■□□□□ 0.42
Trav8d-1Q5R1H8 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav8d-1Q5R1H8 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav8d-1Q5R1H8 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav8d-1Q5R1H8 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav8d-1Q5R1H8 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav8d-1Q5R1H8 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trav8d-1Q5R1H8 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Trav8d-1Q5R1H8 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Trav8d-1Q5R1H8 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Trav8d-1Q5R1H8 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Trav8d-1Q5R1H8 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Trav8d-1Q5R1H8 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Trav8d-1Q5R1H8 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trav8d-1Q5R1H8 Gm4419-202ENSMUST00000226239 1431 ntBASIC17.64■□□□□ 0.41
Trav8d-1Q5R1H8 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Trav8d-1Q5R1H8 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav8d-1Q5R1H8 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trav8d-1Q5R1H8 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trav8d-1Q5R1H8 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav8d-1Q5R1H8 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Trav8d-1Q5R1H8 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Trav8d-1Q5R1H8 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav8d-1Q5R1H8 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav8d-1Q5R1H8 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav8d-1Q5R1H8 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trav8d-1Q5R1H8 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trav8d-1Q5R1H8 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Trav8d-1Q5R1H8 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav8d-1Q5R1H8 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Trav8d-1Q5R1H8 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav8d-1Q5R1H8 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav8d-1Q5R1H8 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trav8d-1Q5R1H8 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC17.6■□□□□ 0.41
Trav8d-1Q5R1H8 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Trav8d-1Q5R1H8 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC17.6■□□□□ 0.41
Trav8d-1Q5R1H8 Gm37136-201ENSMUST00000194368 194 ntBASIC17.6■□□□□ 0.41
Trav8d-1Q5R1H8 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Trav8d-1Q5R1H8 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trav8d-1Q5R1H8 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Trav8d-1Q5R1H8 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC17.6■□□□□ 0.41
Trav8d-1Q5R1H8 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC17.6■□□□□ 0.41
Trav8d-1Q5R1H8 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav8d-1Q5R1H8 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav8d-1Q5R1H8 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Trav8d-1Q5R1H8 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav8d-1Q5R1H8 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC17.59■□□□□ 0.41
Trav8d-1Q5R1H8 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Trav8d-1Q5R1H8 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
Trav8d-1Q5R1H8 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
Trav8d-1Q5R1H8 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trav8d-1Q5R1H8 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trav8d-1Q5R1H8 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC17.58■□□□□ 0.4
Trav8d-1Q5R1H8 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC17.58■□□□□ 0.4
Trav8d-1Q5R1H8 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trav8d-1Q5R1H8 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav8d-1Q5R1H8 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trav8d-1Q5R1H8 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC17.57■□□□□ 0.4
Trav8d-1Q5R1H8 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC17.57■□□□□ 0.4
Trav8d-1Q5R1H8 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav8d-1Q5R1H8 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav8d-1Q5R1H8 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav8d-1Q5R1H8 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav8d-1Q5R1H8 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav8d-1Q5R1H8 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav8d-1Q5R1H8 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Trav8d-1Q5R1H8 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav8d-1Q5R1H8 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms