Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Col8a1Q00780 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col8a1Q00780 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col8a1Q00780 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Col8a1Q00780 Gm45417-201ENSMUST00000209533 758 ntBASIC18.61■□□□□ 0.57
Col8a1Q00780 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Col8a1Q00780 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col8a1Q00780 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col8a1Q00780 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC18.6■□□□□ 0.57
Col8a1Q00780 Gm27454-201ENSMUST00000185090 204 ntBASIC18.6■□□□□ 0.57
Col8a1Q00780 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Col8a1Q00780 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Col8a1Q00780 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC18.6■□□□□ 0.57
Col8a1Q00780 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC18.59■□□□□ 0.57
Col8a1Q00780 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col8a1Q00780 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col8a1Q00780 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Col8a1Q00780 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Col8a1Q00780 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC18.58■□□□□ 0.56
Col8a1Q00780 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col8a1Q00780 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Col8a1Q00780 Gm12821-201ENSMUST00000120022 600 ntBASIC18.57■□□□□ 0.56
Col8a1Q00780 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Col8a1Q00780 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col8a1Q00780 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col8a1Q00780 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC18.56■□□□□ 0.56
Col8a1Q00780 Flvcr1-202ENSMUST00000191946 1216 ntBASIC18.56■□□□□ 0.56
Col8a1Q00780 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Col8a1Q00780 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
Col8a1Q00780 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col8a1Q00780 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Col8a1Q00780 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC18.55■□□□□ 0.56
Col8a1Q00780 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC18.55■□□□□ 0.56
Col8a1Q00780 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC18.55■□□□□ 0.56
Col8a1Q00780 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Col8a1Q00780 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Col8a1Q00780 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
Col8a1Q00780 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col8a1Q00780 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col8a1Q00780 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col8a1Q00780 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col8a1Q00780 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC18.54■□□□□ 0.56
Col8a1Q00780 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col8a1Q00780 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col8a1Q00780 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col8a1Q00780 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col8a1Q00780 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col8a1Q00780 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col8a1Q00780 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col8a1Q00780 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC18.53■□□□□ 0.56
Col8a1Q00780 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col8a1Q00780 Gm40881-201ENSMUST00000223397 166 ntBASIC18.53■□□□□ 0.56
Col8a1Q00780 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Col8a1Q00780 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col8a1Q00780 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col8a1Q00780 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
Col8a1Q00780 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC18.52■□□□□ 0.56
Col8a1Q00780 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col8a1Q00780 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col8a1Q00780 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC18.51■□□□□ 0.55
Col8a1Q00780 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC18.51■□□□□ 0.55
Col8a1Q00780 Gm12922-201ENSMUST00000120626 809 ntBASIC18.51■□□□□ 0.55
Col8a1Q00780 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col8a1Q00780 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col8a1Q00780 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col8a1Q00780 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Col8a1Q00780 Gm29257-201ENSMUST00000186115 639 ntBASIC18.5■□□□□ 0.55
Col8a1Q00780 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC18.5■□□□□ 0.55
Col8a1Q00780 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col8a1Q00780 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
Col8a1Q00780 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col8a1Q00780 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col8a1Q00780 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Col8a1Q00780 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC18.49■□□□□ 0.55
Col8a1Q00780 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col8a1Q00780 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Col8a1Q00780 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Col8a1Q00780 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Col8a1Q00780 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col8a1Q00780 AC153890.1-201ENSMUST00000220021 2469 ntBASIC18.49■□□□□ 0.55
Col8a1Q00780 AC164433.2-201ENSMUST00000226346 1701 ntBASIC18.49■□□□□ 0.55
Col8a1Q00780 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col8a1Q00780 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Col8a1Q00780 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col8a1Q00780 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Col8a1Q00780 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC18.48■□□□□ 0.55
Col8a1Q00780 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col8a1Q00780 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col8a1Q00780 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col8a1Q00780 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC18.47■□□□□ 0.55
Col8a1Q00780 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC18.47■□□□□ 0.55
Col8a1Q00780 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col8a1Q00780 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC18.47■□□□□ 0.55
Col8a1Q00780 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Col8a1Q00780 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC18.45■□□□□ 0.54
Col8a1Q00780 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC18.45■□□□□ 0.54
Col8a1Q00780 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Col8a1Q00780 Gm28536-201ENSMUST00000190971 1317 ntBASIC18.45■□□□□ 0.54
Col8a1Q00780 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Col8a1Q00780 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms