Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
Col18a1P39061 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC30.31■■■□□ 2.44
Col18a1P39061 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Col18a1P39061 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC30.31■■■□□ 2.44
Col18a1P39061 Gm8495-201ENSMUST00000188740 694 ntBASIC30.31■■■□□ 2.44
Col18a1P39061 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Col18a1P39061 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
Col18a1P39061 Gm10399-202ENSMUST00000202768 748 ntBASIC30.3■■■□□ 2.44
Col18a1P39061 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC30.3■■■□□ 2.44
Col18a1P39061 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC30.3■■■□□ 2.44
Col18a1P39061 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
Col18a1P39061 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
Col18a1P39061 Flvcr1-202ENSMUST00000191946 1216 ntBASIC30.29■■■□□ 2.44
Col18a1P39061 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC30.28■■■□□ 2.44
Col18a1P39061 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
Col18a1P39061 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Col18a1P39061 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Col18a1P39061 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Col18a1P39061 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Col18a1P39061 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC30.28■■■□□ 2.44
Col18a1P39061 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC30.28■■■□□ 2.44
Col18a1P39061 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC30.28■■■□□ 2.44
Col18a1P39061 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Col18a1P39061 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
Col18a1P39061 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.44
Col18a1P39061 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.44
Col18a1P39061 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.44
Col18a1P39061 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
Col18a1P39061 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Col18a1P39061 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Col18a1P39061 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC30.26■■■□□ 2.43
Col18a1P39061 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
Col18a1P39061 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Col18a1P39061 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC30.26■■■□□ 2.43
Col18a1P39061 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Col18a1P39061 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
Col18a1P39061 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC30.25■■■□□ 2.43
Col18a1P39061 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC30.25■■■□□ 2.43
Col18a1P39061 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
Col18a1P39061 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Col18a1P39061 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Col18a1P39061 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Col18a1P39061 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Col18a1P39061 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
Col18a1P39061 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Col18a1P39061 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC30.22■■■□□ 2.43
Col18a1P39061 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC30.22■■■□□ 2.43
Col18a1P39061 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC30.22■■■□□ 2.43
Col18a1P39061 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Col18a1P39061 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Col18a1P39061 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
Col18a1P39061 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC30.21■■■□□ 2.43
Col18a1P39061 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC30.2■■■□□ 2.43
Col18a1P39061 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC30.2■■■□□ 2.42
Col18a1P39061 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
Col18a1P39061 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
Col18a1P39061 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Col18a1P39061 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
Col18a1P39061 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC30.17■■■□□ 2.42
Col18a1P39061 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC30.16■■■□□ 2.42
Col18a1P39061 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC30.16■■■□□ 2.42
Col18a1P39061 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
Col18a1P39061 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
Col18a1P39061 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC30.16■■■□□ 2.42
Col18a1P39061 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC30.16■■■□□ 2.42
Col18a1P39061 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Col18a1P39061 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC30.15■■■□□ 2.42
Col18a1P39061 Gm2011-201ENSMUST00000203124 1263 ntBASIC30.15■■■□□ 2.42
Col18a1P39061 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
Col18a1P39061 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC30.14■■■□□ 2.42
Col18a1P39061 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC30.14■■■□□ 2.42
Col18a1P39061 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
Col18a1P39061 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
Col18a1P39061 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
Col18a1P39061 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
Col18a1P39061 Gm29257-201ENSMUST00000186115 639 ntBASIC30.12■■■□□ 2.41
Col18a1P39061 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
Col18a1P39061 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
Col18a1P39061 Gm11847-201ENSMUST00000125165 1119 ntBASIC30.11■■■□□ 2.41
Col18a1P39061 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Col18a1P39061 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC30.11■■■□□ 2.41
Col18a1P39061 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Col18a1P39061 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Col18a1P39061 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC30.11■■■□□ 2.41
Col18a1P39061 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Col18a1P39061 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC30.1■■■□□ 2.41
Col18a1P39061 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Col18a1P39061 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Col18a1P39061 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
Col18a1P39061 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC30.1■■■□□ 2.41
Col18a1P39061 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Col18a1P39061 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC30.09■■■□□ 2.41
Col18a1P39061 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC30.09■■■□□ 2.41
Col18a1P39061 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Col18a1P39061 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Col18a1P39061 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC30.08■■■□□ 2.41
Col18a1P39061 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Col18a1P39061 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
Col18a1P39061 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC30.08■■■□□ 2.41
Col18a1P39061 Gm6206-201ENSMUST00000133472 2199 ntBASIC30.07■■■□□ 2.4
Retrieved 100 of 76,532 protein–RNA pairs in 14.1 ms