Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Msx1P13297 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Msx1P13297 Gm18755-201ENSMUST00000218030 1099 ntBASIC20.57■□□□□ 0.88
Msx1P13297 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Msx1P13297 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Msx1P13297 Gm9959-201ENSMUST00000068277 390 ntBASIC20.57■□□□□ 0.88
Msx1P13297 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Msx1P13297 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Msx1P13297 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Msx1P13297 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Msx1P13297 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Msx1P13297 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC20.56■□□□□ 0.88
Msx1P13297 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC20.56■□□□□ 0.88
Msx1P13297 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Msx1P13297 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Msx1P13297 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Msx1P13297 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Msx1P13297 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Msx1P13297 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.55■□□□□ 0.88
Msx1P13297 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Msx1P13297 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Msx1P13297 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Msx1P13297 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Msx1P13297 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Msx1P13297 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC20.54■□□□□ 0.88
Msx1P13297 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Msx1P13297 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Msx1P13297 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Msx1P13297 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Msx1P13297 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Msx1P13297 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.53■□□□□ 0.88
Msx1P13297 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.53■□□□□ 0.88
Msx1P13297 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Msx1P13297 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC20.53■□□□□ 0.88
Msx1P13297 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Msx1P13297 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Msx1P13297 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Msx1P13297 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC20.52■□□□□ 0.88
Msx1P13297 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
Msx1P13297 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Msx1P13297 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Msx1P13297 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Msx1P13297 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Msx1P13297 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Msx1P13297 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC20.51■□□□□ 0.87
Msx1P13297 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Msx1P13297 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Msx1P13297 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Msx1P13297 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Msx1P13297 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Msx1P13297 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Msx1P13297 Gm7199-201ENSMUST00000118327 1485 ntBASIC20.5■□□□□ 0.87
Msx1P13297 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC20.49■□□□□ 0.87
Msx1P13297 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC20.49■□□□□ 0.87
Msx1P13297 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC20.49■□□□□ 0.87
Msx1P13297 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Msx1P13297 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
Msx1P13297 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Msx1P13297 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Msx1P13297 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Msx1P13297 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
Msx1P13297 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC20.47■□□□□ 0.87
Msx1P13297 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Msx1P13297 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Msx1P13297 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Msx1P13297 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Msx1P13297 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Msx1P13297 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Msx1P13297 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Msx1P13297 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Msx1P13297 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Msx1P13297 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
Msx1P13297 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
Msx1P13297 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Msx1P13297 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Msx1P13297 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC20.45■□□□□ 0.86
Msx1P13297 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
Msx1P13297 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Msx1P13297 Gm6934-201ENSMUST00000194780 1905 ntBASIC20.45■□□□□ 0.86
Msx1P13297 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Msx1P13297 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.44■□□□□ 0.86
Msx1P13297 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Msx1P13297 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Msx1P13297 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Msx1P13297 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Msx1P13297 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msx1P13297 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC20.43■□□□□ 0.86
Msx1P13297 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msx1P13297 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC20.43■□□□□ 0.86
Msx1P13297 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msx1P13297 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msx1P13297 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msx1P13297 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Msx1P13297 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Msx1P13297 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Msx1P13297 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Msx1P13297 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Msx1P13297 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Msx1P13297 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Msx1P13297 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 163.2 ms