Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC27.56■■■□□ 2
Col4a1P02463 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC27.56■■■□□ 2
Col4a1P02463 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Col4a1P02463 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC27.56■■■□□ 2
Col4a1P02463 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Col4a1P02463 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC27.56■■■□□ 2
Col4a1P02463 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Col4a1P02463 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC27.55■■■□□ 2
Col4a1P02463 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC27.55■■■□□ 2
Col4a1P02463 Gm42699-201ENSMUST00000198104 1657 ntBASIC27.55■■■□□ 2
Col4a1P02463 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC27.55■■■□□ 2
Col4a1P02463 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC27.55■■■□□ 2
Col4a1P02463 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
Col4a1P02463 Gm16464-201ENSMUST00000117815 1095 ntBASIC27.54■■■□□ 2
Col4a1P02463 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC27.54■■■□□ 2
Col4a1P02463 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
Col4a1P02463 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC27.53■■■□□ 2
Col4a1P02463 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC27.53■■■□□ 2
Col4a1P02463 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Col4a1P02463 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Col4a1P02463 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Col4a1P02463 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Col4a1P02463 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Col4a1P02463 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Col4a1P02463 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC27.52■■■□□ 2
Col4a1P02463 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC27.52■■■□□ 2
Col4a1P02463 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC27.52■■■□□ 2
Col4a1P02463 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC27.52■■■□□ 2
Col4a1P02463 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC27.5■■□□□ 1.99
Col4a1P02463 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
Col4a1P02463 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
Col4a1P02463 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Col4a1P02463 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC27.49■■□□□ 1.99
Col4a1P02463 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Col4a1P02463 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC27.49■■□□□ 1.99
Col4a1P02463 Etf1-202ENSMUST00000180351 108 ntBASIC27.49■■□□□ 1.99
Col4a1P02463 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC27.49■■□□□ 1.99
Col4a1P02463 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC27.49■■□□□ 1.99
Col4a1P02463 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC27.49■■□□□ 1.99
Col4a1P02463 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC27.49■■□□□ 1.99
Col4a1P02463 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC27.48■■□□□ 1.99
Col4a1P02463 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Col4a1P02463 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC27.48■■□□□ 1.99
Col4a1P02463 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC27.47■■□□□ 1.99
Col4a1P02463 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Col4a1P02463 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Col4a1P02463 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
Col4a1P02463 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
Col4a1P02463 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC27.46■■□□□ 1.99
Col4a1P02463 AC153890.1-201ENSMUST00000220021 2469 ntBASIC27.46■■□□□ 1.99
Col4a1P02463 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Col4a1P02463 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC27.46■■□□□ 1.99
Col4a1P02463 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
Col4a1P02463 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.99
Col4a1P02463 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC27.45■■□□□ 1.99
Col4a1P02463 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC27.45■■□□□ 1.98
Col4a1P02463 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC27.45■■□□□ 1.98
Col4a1P02463 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC27.45■■□□□ 1.98
Col4a1P02463 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Col4a1P02463 Gm28536-201ENSMUST00000190971 1317 ntBASIC27.44■■□□□ 1.98
Col4a1P02463 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC27.44■■□□□ 1.98
Col4a1P02463 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Col4a1P02463 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC27.43■■□□□ 1.98
Col4a1P02463 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC27.42■■□□□ 1.98
Col4a1P02463 Gm21956-201ENSMUST00000179946 522 ntBASIC27.42■■□□□ 1.98
Col4a1P02463 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
Col4a1P02463 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC27.41■■□□□ 1.98
Col4a1P02463 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
Col4a1P02463 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC27.4■■□□□ 1.98
Col4a1P02463 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
Col4a1P02463 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC27.4■■□□□ 1.98
Col4a1P02463 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC27.4■■□□□ 1.98
Col4a1P02463 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC27.4■■□□□ 1.98
Col4a1P02463 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC27.4■■□□□ 1.98
Col4a1P02463 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
Col4a1P02463 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Col4a1P02463 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Col4a1P02463 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC27.39■■□□□ 1.97
Col4a1P02463 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
Col4a1P02463 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC27.39■■□□□ 1.97
Col4a1P02463 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC27.38■■□□□ 1.97
Col4a1P02463 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
Col4a1P02463 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC27.38■■□□□ 1.97
Col4a1P02463 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC27.37■■□□□ 1.97
Col4a1P02463 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC27.37■■□□□ 1.97
Col4a1P02463 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
Col4a1P02463 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
Col4a1P02463 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
Col4a1P02463 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC27.36■■□□□ 1.97
Col4a1P02463 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Col4a1P02463 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
Col4a1P02463 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
Col4a1P02463 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Col4a1P02463 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC27.36■■□□□ 1.97
Col4a1P02463 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC27.36■■□□□ 1.97
Col4a1P02463 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
Col4a1P02463 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC27.35■■□□□ 1.97
Col4a1P02463 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
Col4a1P02463 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
Col4a1P02463 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC27.34■■□□□ 1.97
Retrieved 100 of 76,532 protein–RNA pairs in 11 ms