Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Gm42699-201ENSMUST00000198104 1657 ntBASIC20.13■□□□□ 0.81
Col5a1O88207 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col5a1O88207 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Col5a1O88207 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col5a1O88207 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col5a1O88207 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col5a1O88207 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Col5a1O88207 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
Col5a1O88207 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC20.11■□□□□ 0.81
Col5a1O88207 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col5a1O88207 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col5a1O88207 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col5a1O88207 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col5a1O88207 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Col5a1O88207 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col5a1O88207 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col5a1O88207 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col5a1O88207 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
Col5a1O88207 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Col5a1O88207 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col5a1O88207 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col5a1O88207 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Col5a1O88207 Gm9847-201ENSMUST00000052528 599 ntBASIC20.09■□□□□ 0.81
Col5a1O88207 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col5a1O88207 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Col5a1O88207 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Col5a1O88207 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC20.09■□□□□ 0.81
Col5a1O88207 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col5a1O88207 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col5a1O88207 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col5a1O88207 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col5a1O88207 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC20.08■□□□□ 0.8
Col5a1O88207 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col5a1O88207 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col5a1O88207 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col5a1O88207 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC20.07■□□□□ 0.8
Col5a1O88207 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Col5a1O88207 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col5a1O88207 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Col5a1O88207 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Col5a1O88207 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC20.06■□□□□ 0.8
Col5a1O88207 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Col5a1O88207 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col5a1O88207 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col5a1O88207 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col5a1O88207 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col5a1O88207 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col5a1O88207 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col5a1O88207 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Col5a1O88207 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col5a1O88207 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col5a1O88207 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Col5a1O88207 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Col5a1O88207 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC20.04■□□□□ 0.8
Col5a1O88207 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Col5a1O88207 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Col5a1O88207 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC20.04■□□□□ 0.8
Col5a1O88207 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col5a1O88207 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col5a1O88207 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC20.03■□□□□ 0.8
Col5a1O88207 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col5a1O88207 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Col5a1O88207 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col5a1O88207 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col5a1O88207 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC20.02■□□□□ 0.79
Col5a1O88207 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col5a1O88207 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col5a1O88207 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col5a1O88207 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Col5a1O88207 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col5a1O88207 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Col5a1O88207 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC20■□□□□ 0.79
Col5a1O88207 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC20■□□□□ 0.79
Col5a1O88207 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col5a1O88207 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
Col5a1O88207 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Col5a1O88207 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col5a1O88207 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Col5a1O88207 Appbp2os-202ENSMUST00000206972 447 ntBASIC19.99■□□□□ 0.79
Col5a1O88207 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC19.99■□□□□ 0.79
Col5a1O88207 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col5a1O88207 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Col5a1O88207 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col5a1O88207 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Col5a1O88207 Gm22238-201ENSMUST00000175222 88 ntBASIC19.99■□□□□ 0.79
Col5a1O88207 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Col5a1O88207 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
Col5a1O88207 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Col5a1O88207 Gm27454-201ENSMUST00000185090 204 ntBASIC19.98■□□□□ 0.79
Col5a1O88207 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col5a1O88207 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col5a1O88207 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col5a1O88207 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Col5a1O88207 Gm7417-201ENSMUST00000192950 473 ntBASIC19.97■□□□□ 0.79
Col5a1O88207 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col5a1O88207 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col5a1O88207 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC19.96■□□□□ 0.79
Col5a1O88207 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Col5a1O88207 Gm45417-201ENSMUST00000209533 758 ntBASIC19.96■□□□□ 0.79
Col5a1O88207 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 13.4 ms