Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Clk4O35493 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Clk4O35493 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Clk4O35493 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC20.76■□□□□ 0.91
Clk4O35493 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Clk4O35493 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Clk4O35493 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Clk4O35493 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Clk4O35493 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Clk4O35493 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Clk4O35493 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Clk4O35493 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Clk4O35493 Notumos-201ENSMUST00000151998 2659 ntBASIC20.75■□□□□ 0.91
Clk4O35493 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Clk4O35493 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Clk4O35493 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clk4O35493 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
Clk4O35493 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Clk4O35493 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Clk4O35493 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Clk4O35493 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Clk4O35493 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Clk4O35493 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Clk4O35493 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Clk4O35493 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Clk4O35493 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.73■□□□□ 0.91
Clk4O35493 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Clk4O35493 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clk4O35493 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clk4O35493 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clk4O35493 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Clk4O35493 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Clk4O35493 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
Clk4O35493 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC20.71■□□□□ 0.91
Clk4O35493 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Clk4O35493 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Clk4O35493 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Clk4O35493 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Clk4O35493 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC20.7■□□□□ 0.9
Clk4O35493 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Clk4O35493 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Clk4O35493 Gm28731-201ENSMUST00000185564 1569 ntBASIC20.7■□□□□ 0.9
Clk4O35493 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Clk4O35493 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Clk4O35493 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Clk4O35493 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Clk4O35493 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
Clk4O35493 Gm5067-201ENSMUST00000170449 1009 ntBASIC20.69■□□□□ 0.9
Clk4O35493 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clk4O35493 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Clk4O35493 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Clk4O35493 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
Clk4O35493 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clk4O35493 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Clk4O35493 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Clk4O35493 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Clk4O35493 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Clk4O35493 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Clk4O35493 Gm43592-201ENSMUST00000196922 1165 ntBASIC20.66■□□□□ 0.9
Clk4O35493 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Clk4O35493 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC20.66■□□□□ 0.9
Clk4O35493 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Clk4O35493 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Clk4O35493 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Clk4O35493 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Clk4O35493 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Clk4O35493 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Clk4O35493 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
Clk4O35493 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC20.64■□□□□ 0.89
Clk4O35493 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clk4O35493 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clk4O35493 AC153524.1-201ENSMUST00000220436 1935 ntBASIC20.63■□□□□ 0.89
Clk4O35493 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
Clk4O35493 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Clk4O35493 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Clk4O35493 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Clk4O35493 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Clk4O35493 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Clk4O35493 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
Clk4O35493 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Clk4O35493 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Clk4O35493 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Clk4O35493 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Clk4O35493 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Clk4O35493 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Clk4O35493 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Clk4O35493 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Clk4O35493 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Clk4O35493 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Clk4O35493 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Clk4O35493 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Clk4O35493 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Clk4O35493 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Clk4O35493 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Clk4O35493 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clk4O35493 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clk4O35493 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clk4O35493 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Clk4O35493 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Clk4O35493 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms