Protein–RNA interactions for Protein: J3QMG8

Trav13d-3, T cell receptor alpha variable 13D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-3J3QMG8 Gm5786-201ENSMUST00000085368 882 ntBASIC19.17■□□□□ 0.66
Trav13d-3J3QMG8 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trav13d-3J3QMG8 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trav13d-3J3QMG8 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Trav13d-3J3QMG8 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trav13d-3J3QMG8 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trav13d-3J3QMG8 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trav13d-3J3QMG8 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC19.16■□□□□ 0.66
Trav13d-3J3QMG8 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trav13d-3J3QMG8 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trav13d-3J3QMG8 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav13d-3J3QMG8 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav13d-3J3QMG8 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav13d-3J3QMG8 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav13d-3J3QMG8 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav13d-3J3QMG8 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav13d-3J3QMG8 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC19.16■□□□□ 0.66
Trav13d-3J3QMG8 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trav13d-3J3QMG8 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trav13d-3J3QMG8 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trav13d-3J3QMG8 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trav13d-3J3QMG8 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trav13d-3J3QMG8 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trav13d-3J3QMG8 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trav13d-3J3QMG8 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trav13d-3J3QMG8 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trav13d-3J3QMG8 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC19.15■□□□□ 0.66
Trav13d-3J3QMG8 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trav13d-3J3QMG8 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Trav13d-3J3QMG8 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Trav13d-3J3QMG8 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
Trav13d-3J3QMG8 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trav13d-3J3QMG8 Gm17641-201ENSMUST00000166328 2350 ntBASIC19.14■□□□□ 0.65
Trav13d-3J3QMG8 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trav13d-3J3QMG8 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trav13d-3J3QMG8 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trav13d-3J3QMG8 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
Trav13d-3J3QMG8 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC19.13■□□□□ 0.65
Trav13d-3J3QMG8 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trav13d-3J3QMG8 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trav13d-3J3QMG8 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trav13d-3J3QMG8 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trav13d-3J3QMG8 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trav13d-3J3QMG8 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC19.12■□□□□ 0.65
Trav13d-3J3QMG8 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trav13d-3J3QMG8 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Trav13d-3J3QMG8 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trav13d-3J3QMG8 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trav13d-3J3QMG8 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trav13d-3J3QMG8 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trav13d-3J3QMG8 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC19.11■□□□□ 0.65
Trav13d-3J3QMG8 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Trav13d-3J3QMG8 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trav13d-3J3QMG8 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trav13d-3J3QMG8 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
Trav13d-3J3QMG8 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trav13d-3J3QMG8 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav13d-3J3QMG8 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav13d-3J3QMG8 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav13d-3J3QMG8 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav13d-3J3QMG8 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav13d-3J3QMG8 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav13d-3J3QMG8 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
Trav13d-3J3QMG8 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav13d-3J3QMG8 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC19.1■□□□□ 0.65
Trav13d-3J3QMG8 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav13d-3J3QMG8 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav13d-3J3QMG8 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav13d-3J3QMG8 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav13d-3J3QMG8 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav13d-3J3QMG8 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav13d-3J3QMG8 AC115037.1-201ENSMUST00000223391 2173 ntBASIC19.09■□□□□ 0.65
Trav13d-3J3QMG8 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Trav13d-3J3QMG8 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
Trav13d-3J3QMG8 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trav13d-3J3QMG8 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trav13d-3J3QMG8 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trav13d-3J3QMG8 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
Trav13d-3J3QMG8 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trav13d-3J3QMG8 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trav13d-3J3QMG8 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC19.08■□□□□ 0.64
Trav13d-3J3QMG8 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trav13d-3J3QMG8 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trav13d-3J3QMG8 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trav13d-3J3QMG8 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trav13d-3J3QMG8 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trav13d-3J3QMG8 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trav13d-3J3QMG8 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC19.07■□□□□ 0.64
Trav13d-3J3QMG8 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC19.07■□□□□ 0.64
Trav13d-3J3QMG8 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trav13d-3J3QMG8 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Trav13d-3J3QMG8 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Trav13d-3J3QMG8 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trav13d-3J3QMG8 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trav13d-3J3QMG8 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Trav13d-3J3QMG8 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav13d-3J3QMG8 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Trav13d-3J3QMG8 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav13d-3J3QMG8 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav13d-3J3QMG8 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms