Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msh4Q99MT2 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Msh4Q99MT2 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Gm13223-201ENSMUST00000118609 747 ntBASIC13.65□□□□□ -0.22
Msh4Q99MT2 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Mir7023-201ENSMUST00000185093 64 ntBASIC13.65□□□□□ -0.22
Msh4Q99MT2 Gm17837-201ENSMUST00000186435 985 ntBASIC13.65□□□□□ -0.22
Msh4Q99MT2 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC13.65□□□□□ -0.22
Msh4Q99MT2 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Gm37411-201ENSMUST00000194180 2282 ntBASIC13.65□□□□□ -0.22
Msh4Q99MT2 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Msh4Q99MT2 Matn2-206ENSMUST00000228570 2798 ntBASIC13.65□□□□□ -0.22
Msh4Q99MT2 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msh4Q99MT2 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msh4Q99MT2 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm9719-201ENSMUST00000162765 543 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm25144-201ENSMUST00000179561 110 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm25352-201ENSMUST00000179815 110 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm29310-201ENSMUST00000185468 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm21825-201ENSMUST00000185728 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm29109-201ENSMUST00000185895 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm21896-201ENSMUST00000186520 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm21873-201ENSMUST00000186728 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm21794-201ENSMUST00000187056 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm21880-201ENSMUST00000187275 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm21826-201ENSMUST00000187451 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm21198-201ENSMUST00000188393 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm21749-201ENSMUST00000189343 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm21901-201ENSMUST00000189568 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm29424-201ENSMUST00000189716 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm28599-201ENSMUST00000189838 694 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm21867-201ENSMUST00000189917 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm29269-201ENSMUST00000190087 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm21722-201ENSMUST00000190153 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm28423-201ENSMUST00000190701 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm21899-201ENSMUST00000190745 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm21910-201ENSMUST00000191163 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm21849-201ENSMUST00000191571 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm28678-201ENSMUST00000191593 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm20910-201ENSMUST00000193268 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm21871-201ENSMUST00000194621 696 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm20949-201ENSMUST00000206478 952 ntBASIC13.64□□□□□ -0.23
Msh4Q99MT2 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Msh4Q99MT2 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 47.8 ms