Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim9Q8C7M3 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim9Q8C7M3 Mir497b-201ENSMUST00000093601 125 ntBASIC15.44■□□□□ 0.06
Trim9Q8C7M3 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim9Q8C7M3 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim9Q8C7M3 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim9Q8C7M3 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim9Q8C7M3 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Trim9Q8C7M3 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Trim9Q8C7M3 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC15.44■□□□□ 0.06
Trim9Q8C7M3 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Trim9Q8C7M3 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim9Q8C7M3 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim9Q8C7M3 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim9Q8C7M3 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Trim9Q8C7M3 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim9Q8C7M3 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim9Q8C7M3 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Trim9Q8C7M3 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Gm30238-201ENSMUST00000195528 2603 ntBASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Gm14767-201ENSMUST00000121559 586 ntBASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Gm21470-201ENSMUST00000187680 696 ntBASIC15.43■□□□□ 0.06
Trim9Q8C7M3 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Zkscan14-203ENSMUST00000198959 2243 ntBASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Gm2420-202ENSMUST00000202224 2249 ntBASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Trim9Q8C7M3 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Gm13453-201ENSMUST00000118708 357 ntBASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trim9Q8C7M3 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Trim9Q8C7M3 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim9Q8C7M3 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Trim9Q8C7M3 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim9Q8C7M3 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trim9Q8C7M3 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Trim9Q8C7M3 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Trim9Q8C7M3 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms