Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Gm15371-201ENSMUST00000117057 784 ntBASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Gm43630-201ENSMUST00000201550 776 ntBASIC19.1■□□□□ 0.65
Usp40Q8BWR4 AC166349.1-201ENSMUST00000220866 695 ntBASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Gm12620-201ENSMUST00000119791 1986 ntBASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Gm12612-201ENSMUST00000140182 1986 ntBASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Zscan30-202ENSMUST00000224144 1458 ntBASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Ap5m1-205ENSMUST00000227431 3757 ntBASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Gm13612-201ENSMUST00000119276 390 ntBASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Usp40Q8BWR4 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC19.09■□□□□ 0.65
Usp40Q8BWR4 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Usp40Q8BWR4 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC19.08■□□□□ 0.65
Usp40Q8BWR4 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Usp40Q8BWR4 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC19.08■□□□□ 0.65
Usp40Q8BWR4 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.65
Usp40Q8BWR4 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Usp40Q8BWR4 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.65
Usp40Q8BWR4 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Usp40Q8BWR4 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.65
Usp40Q8BWR4 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC19.08■□□□□ 0.64
Usp40Q8BWR4 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC19.08■□□□□ 0.64
Usp40Q8BWR4 Gm12134-201ENSMUST00000122109 520 ntBASIC19.08■□□□□ 0.64
Usp40Q8BWR4 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC19.08■□□□□ 0.64
Usp40Q8BWR4 Gm27847-201ENSMUST00000183711 107 ntBASIC19.08■□□□□ 0.64
Usp40Q8BWR4 Gm27375-201ENSMUST00000183799 107 ntBASIC19.08■□□□□ 0.64
Usp40Q8BWR4 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Usp40Q8BWR4 Gm9899-201ENSMUST00000065519 555 ntBASIC19.08■□□□□ 0.64
Usp40Q8BWR4 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
Usp40Q8BWR4 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
Usp40Q8BWR4 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Usp40Q8BWR4 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
Usp40Q8BWR4 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Usp40Q8BWR4 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
Usp40Q8BWR4 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Usp40Q8BWR4 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Usp40Q8BWR4 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Usp40Q8BWR4 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
Usp40Q8BWR4 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Usp40Q8BWR4 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
Usp40Q8BWR4 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp40Q8BWR4 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp40Q8BWR4 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Usp40Q8BWR4 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp40Q8BWR4 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp40Q8BWR4 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp40Q8BWR4 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Usp40Q8BWR4 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Usp40Q8BWR4 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 42.2 ms