Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
Trim41Q5NCC3 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
Trim41Q5NCC3 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Trim41Q5NCC3 Gm37728-201ENSMUST00000195025 2292 ntBASIC24.18■■□□□ 1.46
Trim41Q5NCC3 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Trim41Q5NCC3 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
Trim41Q5NCC3 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Trim41Q5NCC3 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Trim41Q5NCC3 Gm44645-201ENSMUST00000205492 1653 ntBASIC24.18■■□□□ 1.46
Trim41Q5NCC3 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Trim41Q5NCC3 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trim41Q5NCC3 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trim41Q5NCC3 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trim41Q5NCC3 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trim41Q5NCC3 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
Trim41Q5NCC3 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
Trim41Q5NCC3 Gm10605-202ENSMUST00000183019 3198 ntBASIC24.17■■□□□ 1.46
Trim41Q5NCC3 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Trim41Q5NCC3 Mup-ps23-201ENSMUST00000118063 630 ntBASIC24.17■■□□□ 1.46
Trim41Q5NCC3 Gm15429-201ENSMUST00000151268 798 ntBASIC24.17■■□□□ 1.46
Trim41Q5NCC3 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC24.17■■□□□ 1.46
Trim41Q5NCC3 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC24.17■■□□□ 1.46
Trim41Q5NCC3 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC24.17■■□□□ 1.46
Trim41Q5NCC3 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trim41Q5NCC3 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trim41Q5NCC3 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trim41Q5NCC3 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
Trim41Q5NCC3 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Trim41Q5NCC3 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC24.16■■□□□ 1.46
Trim41Q5NCC3 AC126549.2-201ENSMUST00000223997 1976 ntBASIC24.16■■□□□ 1.46
Trim41Q5NCC3 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Trim41Q5NCC3 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Trim41Q5NCC3 Gm9333-201ENSMUST00000205452 1323 ntBASIC24.16■■□□□ 1.46
Trim41Q5NCC3 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC24.16■■□□□ 1.46
Trim41Q5NCC3 Gm37015-201ENSMUST00000192763 1521 ntBASIC24.16■■□□□ 1.46
Trim41Q5NCC3 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC24.16■■□□□ 1.46
Trim41Q5NCC3 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC24.16■■□□□ 1.46
Trim41Q5NCC3 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Trim41Q5NCC3 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Trim41Q5NCC3 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC24.16■■□□□ 1.46
Trim41Q5NCC3 Gm4971-201ENSMUST00000205991 1108 ntBASIC24.16■■□□□ 1.46
Trim41Q5NCC3 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Trim41Q5NCC3 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Trim41Q5NCC3 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Trim41Q5NCC3 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Trim41Q5NCC3 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Trim41Q5NCC3 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC24.16■■□□□ 1.46
Trim41Q5NCC3 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Trim41Q5NCC3 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Trim41Q5NCC3 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Trim41Q5NCC3 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
Trim41Q5NCC3 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
Trim41Q5NCC3 Gm13050-201ENSMUST00000122149 1345 ntBASIC24.15■■□□□ 1.46
Trim41Q5NCC3 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
Trim41Q5NCC3 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Trim41Q5NCC3 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Trim41Q5NCC3 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
Trim41Q5NCC3 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
Trim41Q5NCC3 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC24.15■■□□□ 1.46
Trim41Q5NCC3 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC24.15■■□□□ 1.46
Trim41Q5NCC3 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
Trim41Q5NCC3 Gm11814-201ENSMUST00000119515 929 ntBASIC24.15■■□□□ 1.46
Trim41Q5NCC3 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Trim41Q5NCC3 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC24.15■■□□□ 1.46
Trim41Q5NCC3 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Trim41Q5NCC3 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC24.15■■□□□ 1.46
Trim41Q5NCC3 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Trim41Q5NCC3 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
Trim41Q5NCC3 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Trim41Q5NCC3 Gm44981-201ENSMUST00000205549 1943 ntBASIC24.15■■□□□ 1.46
Trim41Q5NCC3 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Trim41Q5NCC3 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Trim41Q5NCC3 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
Trim41Q5NCC3 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.46
Trim41Q5NCC3 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.46
Trim41Q5NCC3 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.46
Trim41Q5NCC3 Zcwpw2-202ENSMUST00000187329 1469 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
Trim41Q5NCC3 Gm9347-201ENSMUST00000211473 1607 ntBASIC24.14■■□□□ 1.46
Trim41Q5NCC3 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
Trim41Q5NCC3 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC24.14■■□□□ 1.45
Trim41Q5NCC3 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
Trim41Q5NCC3 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC24.14■■□□□ 1.45
Trim41Q5NCC3 Gm2383-201ENSMUST00000181461 807 ntBASIC24.14■■□□□ 1.45
Trim41Q5NCC3 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
Trim41Q5NCC3 Asna1-201ENSMUST00000064314 1256 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Trim41Q5NCC3 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Trim41Q5NCC3 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Trim41Q5NCC3 AC168058.1-201ENSMUST00000219521 2282 ntBASIC24.14■■□□□ 1.45
Trim41Q5NCC3 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Trim41Q5NCC3 Gm21038-201ENSMUST00000222205 1383 ntBASIC24.14■■□□□ 1.45
Trim41Q5NCC3 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Trim41Q5NCC3 AC113441.2-201ENSMUST00000221538 1468 ntBASIC24.13■■□□□ 1.45
Trim41Q5NCC3 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Trim41Q5NCC3 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Trim41Q5NCC3 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Trim41Q5NCC3 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
Trim41Q5NCC3 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC24.13■■□□□ 1.45
Trim41Q5NCC3 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Trim41Q5NCC3 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
Trim41Q5NCC3 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms