Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Limch1Q3UH68 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC16.48■□□□□ 0.23
Limch1Q3UH68 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Limch1Q3UH68 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Limch1Q3UH68 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Limch1Q3UH68 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Limch1Q3UH68 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC16.48■□□□□ 0.23
Limch1Q3UH68 Gm44344-201ENSMUST00000200287 129 ntBASIC16.48■□□□□ 0.23
Limch1Q3UH68 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC16.48■□□□□ 0.23
Limch1Q3UH68 AC132863.2-201ENSMUST00000226643 799 ntBASIC16.48■□□□□ 0.23
Limch1Q3UH68 AC121598.1-201ENSMUST00000228224 1019 ntBASIC16.48■□□□□ 0.23
Limch1Q3UH68 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Limch1Q3UH68 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Gm16215-201ENSMUST00000161990 637 ntBASIC16.47■□□□□ 0.23
Limch1Q3UH68 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Gm44608-201ENSMUST00000206827 855 ntBASIC16.47■□□□□ 0.23
Limch1Q3UH68 AC131690.1-201ENSMUST00000218406 374 ntBASIC16.47■□□□□ 0.23
Limch1Q3UH68 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Limch1Q3UH68 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Limch1Q3UH68 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Limch1Q3UH68 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC16.46■□□□□ 0.23
Limch1Q3UH68 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Limch1Q3UH68 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Limch1Q3UH68 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Limch1Q3UH68 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC16.46■□□□□ 0.23
Limch1Q3UH68 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC16.46■□□□□ 0.23
Limch1Q3UH68 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Limch1Q3UH68 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Limch1Q3UH68 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Limch1Q3UH68 Gm27838-201ENSMUST00000184829 128 ntBASIC16.46■□□□□ 0.23
Limch1Q3UH68 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Limch1Q3UH68 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Limch1Q3UH68 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
Limch1Q3UH68 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Limch1Q3UH68 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
Limch1Q3UH68 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Limch1Q3UH68 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Limch1Q3UH68 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Limch1Q3UH68 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Limch1Q3UH68 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Limch1Q3UH68 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
Limch1Q3UH68 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Limch1Q3UH68 Syt7-204ENSMUST00000223586 1344 ntBASIC16.45■□□□□ 0.22
Limch1Q3UH68 BC001981-202ENSMUST00000191393 1545 ntBASIC16.45■□□□□ 0.22
Limch1Q3UH68 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Limch1Q3UH68 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Limch1Q3UH68 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Limch1Q3UH68 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Limch1Q3UH68 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 55.9 ms