Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Gm18041-201ENSMUST00000218210 618 ntBASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col28a1Q2UY11 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Gm14371-201ENSMUST00000138925 1518 ntBASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Gm37844-201ENSMUST00000192473 4097 ntBASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 AC155252.2-201ENSMUST00000226946 680 ntBASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col28a1Q2UY11 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Grk6-205ENSMUST00000224653 2976 ntBASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Mir7036b-201ENSMUST00000184791 63 ntBASIC13.6□□□□□ -0.23
Col28a1Q2UY11 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 AC139054.1-201ENSMUST00000226898 1598 ntBASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col28a1Q2UY11 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 68 ms