Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Camk2g-217ENSMUST00000226630 1937 ntBASIC12.07□□□□□ -0.48
Nkx3-1P97436 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Gm16425-201ENSMUST00000118143 3130 ntBASIC12.07□□□□□ -0.48
Nkx3-1P97436 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Gm15240-201ENSMUST00000118156 720 ntBASIC12.07□□□□□ -0.48
Nkx3-1P97436 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Fbxl12-205ENSMUST00000140702 1555 ntBASIC12.07□□□□□ -0.48
Nkx3-1P97436 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC12.07□□□□□ -0.48
Nkx3-1P97436 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Gm44799-201ENSMUST00000207639 1202 ntBASIC12.07□□□□□ -0.48
Nkx3-1P97436 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Nkx3-1P97436 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC12.07□□□□□ -0.48
Nkx3-1P97436 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Nkx3-1P97436 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Gm9816-201ENSMUST00000122292 1414 ntBASIC12.06□□□□□ -0.48
Nkx3-1P97436 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Gm5303-201ENSMUST00000117943 1252 ntBASIC12.06□□□□□ -0.48
Nkx3-1P97436 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Gm6244-201ENSMUST00000178732 841 ntBASIC12.06□□□□□ -0.48
Nkx3-1P97436 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC12.06□□□□□ -0.48
Nkx3-1P97436 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC12.06□□□□□ -0.48
Nkx3-1P97436 AC155729.1-201ENSMUST00000227758 544 ntBASIC12.06□□□□□ -0.48
Nkx3-1P97436 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 AC167013.2-201ENSMUST00000228520 2684 ntBASIC12.06□□□□□ -0.48
Nkx3-1P97436 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Nkx3-1P97436 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC12.05□□□□□ -0.48
Nkx3-1P97436 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms