Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx3P70354 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Msx3P70354 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Msx3P70354 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx3P70354 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC14.41□□□□□ -0.1
Msx3P70354 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC14.41□□□□□ -0.1
Msx3P70354 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx3P70354 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Msx3P70354 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Msx3P70354 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Gm11405-201ENSMUST00000118689 1556 ntBASIC14.4□□□□□ -0.1
Msx3P70354 Gm13517-201ENSMUST00000120782 1495 ntBASIC14.4□□□□□ -0.1
Msx3P70354 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Msx3P70354 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC14.4□□□□□ -0.1
Msx3P70354 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC14.4□□□□□ -0.1
Msx3P70354 AC151286.1-201ENSMUST00000198489 145 ntBASIC14.4□□□□□ -0.1
Msx3P70354 Gm5312-201ENSMUST00000203728 547 ntBASIC14.4□□□□□ -0.1
Msx3P70354 AC132104.2-201ENSMUST00000215011 266 ntBASIC14.4□□□□□ -0.1
Msx3P70354 AC140397.2-201ENSMUST00000224213 834 ntBASIC14.4□□□□□ -0.1
Msx3P70354 AC149294.4-201ENSMUST00000227870 882 ntBASIC14.4□□□□□ -0.1
Msx3P70354 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Gm38391-201ENSMUST00000191720 4069 ntBASIC14.4□□□□□ -0.1
Msx3P70354 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Msx3P70354 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msx3P70354 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msx3P70354 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Msx3P70354 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msx3P70354 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msx3P70354 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Msx3P70354 Gm24543-201ENSMUST00000103867 82 ntBASIC14.39□□□□□ -0.11
Msx3P70354 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
Msx3P70354 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC14.39□□□□□ -0.11
Msx3P70354 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msx3P70354 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC14.39□□□□□ -0.11
Msx3P70354 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msx3P70354 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Msx3P70354 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
Msx3P70354 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msx3P70354 Gm29741-201ENSMUST00000192667 421 ntBASIC14.39□□□□□ -0.11
Msx3P70354 Ighv1-25-201ENSMUST00000195638 345 ntBASIC14.39□□□□□ -0.11
Msx3P70354 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC14.39□□□□□ -0.11
Msx3P70354 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msx3P70354 Gm12626-201ENSMUST00000117339 1983 ntBASIC14.39□□□□□ -0.11
Msx3P70354 Gm12623-201ENSMUST00000119849 1983 ntBASIC14.39□□□□□ -0.11
Msx3P70354 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msx3P70354 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msx3P70354 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msx3P70354 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msx3P70354 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC14.39□□□□□ -0.11
Msx3P70354 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msx3P70354 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Msx3P70354 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msx3P70354 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msx3P70354 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msx3P70354 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msx3P70354 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Msx3P70354 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msx3P70354 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msx3P70354 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msx3P70354 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC14.38□□□□□ -0.11
Msx3P70354 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC14.38□□□□□ -0.11
Msx3P70354 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC14.38□□□□□ -0.11
Msx3P70354 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msx3P70354 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msx3P70354 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Msx3P70354 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msx3P70354 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Msx3P70354 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Msx3P70354 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC14.38□□□□□ -0.11
Msx3P70354 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msx3P70354 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Msx3P70354 Gm45779-201ENSMUST00000212189 4064 ntBASIC14.38□□□□□ -0.11
Msx3P70354 Mir449b-201ENSMUST00000104833 80 ntBASIC14.38□□□□□ -0.11
Msx3P70354 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Msx3P70354 Gm15693-201ENSMUST00000120470 637 ntBASIC14.38□□□□□ -0.11
Msx3P70354 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC14.38□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms