Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
Col18a1P39061 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col18a1P39061 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col18a1P39061 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC18.13■□□□□ 0.49
Col18a1P39061 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col18a1P39061 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col18a1P39061 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col18a1P39061 Ighv1-61-201ENSMUST00000103531 351 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Col18a1P39061 Gm13875-201ENSMUST00000120162 282 ntBASIC18.13■□□□□ 0.49
Col18a1P39061 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col18a1P39061 Gm18734-201ENSMUST00000172937 808 ntBASIC18.13■□□□□ 0.49
Col18a1P39061 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC18.13■□□□□ 0.49
Col18a1P39061 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col18a1P39061 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Col18a1P39061 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col18a1P39061 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Col18a1P39061 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Col18a1P39061 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col18a1P39061 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col18a1P39061 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col18a1P39061 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Col18a1P39061 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Col18a1P39061 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col18a1P39061 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col18a1P39061 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC18.12■□□□□ 0.49
Col18a1P39061 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC18.12■□□□□ 0.49
Col18a1P39061 CT025694.1-201ENSMUST00000226188 934 ntBASIC18.12■□□□□ 0.49
Col18a1P39061 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Col18a1P39061 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC18.12■□□□□ 0.49
Col18a1P39061 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col18a1P39061 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col18a1P39061 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Col18a1P39061 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col18a1P39061 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC18.12■□□□□ 0.49
Col18a1P39061 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col18a1P39061 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col18a1P39061 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC18.12■□□□□ 0.49
Col18a1P39061 Gm12020-201ENSMUST00000119030 2042 ntBASIC18.12■□□□□ 0.49
Col18a1P39061 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col18a1P39061 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC18.12■□□□□ 0.49
Col18a1P39061 Gm43081-201ENSMUST00000199082 1380 ntBASIC18.12■□□□□ 0.49
Col18a1P39061 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col18a1P39061 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col18a1P39061 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC18.12■□□□□ 0.49
Col18a1P39061 AC141438.2-201ENSMUST00000215068 271 ntBASIC18.12■□□□□ 0.49
Col18a1P39061 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col18a1P39061 AC135114.1-201ENSMUST00000228682 270 ntBASIC18.12■□□□□ 0.49
Col18a1P39061 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Col18a1P39061 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Col18a1P39061 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC18.11■□□□□ 0.49
Col18a1P39061 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC18.11■□□□□ 0.49
Col18a1P39061 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col18a1P39061 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col18a1P39061 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Col18a1P39061 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC18.11■□□□□ 0.49
Col18a1P39061 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Col18a1P39061 Crry-ps-201ENSMUST00000079090 1309 ntBASIC18.11■□□□□ 0.49
Col18a1P39061 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Col18a1P39061 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Col18a1P39061 Gm11930-201ENSMUST00000117788 190 ntBASIC18.11■□□□□ 0.49
Col18a1P39061 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Col18a1P39061 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Col18a1P39061 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC18.11■□□□□ 0.49
Col18a1P39061 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Col18a1P39061 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Col18a1P39061 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Col18a1P39061 CU062626.3-201ENSMUST00000225522 1411 ntBASIC18.1■□□□□ 0.49
Col18a1P39061 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC18.1■□□□□ 0.49
Col18a1P39061 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col18a1P39061 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col18a1P39061 Gm38102-201ENSMUST00000192791 1935 ntBASIC18.1■□□□□ 0.49
Col18a1P39061 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col18a1P39061 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Col18a1P39061 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col18a1P39061 Gm26361-201ENSMUST00000158868 186 ntBASIC18.1■□□□□ 0.49
Col18a1P39061 Gm8913-201ENSMUST00000209491 641 ntBASIC18.1■□□□□ 0.49
Col18a1P39061 AC123665.1-201ENSMUST00000228204 438 ntBASIC18.1■□□□□ 0.49
Col18a1P39061 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col18a1P39061 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col18a1P39061 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col18a1P39061 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col18a1P39061 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col18a1P39061 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col18a1P39061 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col18a1P39061 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col18a1P39061 AC101945.2-201ENSMUST00000227886 1377 ntBASIC18.1■□□□□ 0.49
Col18a1P39061 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Col18a1P39061 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Col18a1P39061 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Col18a1P39061 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col18a1P39061 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col18a1P39061 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col18a1P39061 Gm6335-201ENSMUST00000118081 1194 ntBASIC18.09■□□□□ 0.49
Col18a1P39061 Gm7816-201ENSMUST00000119884 1194 ntBASIC18.09■□□□□ 0.49
Col18a1P39061 Gm15542-201ENSMUST00000121585 1194 ntBASIC18.09■□□□□ 0.49
Col18a1P39061 Gm45219-201ENSMUST00000205602 465 ntBASIC18.09■□□□□ 0.49
Col18a1P39061 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col18a1P39061 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col18a1P39061 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Col18a1P39061 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 55.2 ms