Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RaraP11416 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC15.13■□□□□ 0.01
RaraP11416 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC15.13■□□□□ 0.01
RaraP11416 Gm45751-201ENSMUST00000210185 1573 ntBASIC15.13■□□□□ 0.01
RaraP11416 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC15.13■□□□□ 0.01
RaraP11416 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RaraP11416 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RaraP11416 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
RaraP11416 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
RaraP11416 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RaraP11416 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RaraP11416 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
RaraP11416 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RaraP11416 AC154262.2-201ENSMUST00000224310 2293 ntBASIC15.13■□□□□ 0.01
RaraP11416 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
RaraP11416 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RaraP11416 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
RaraP11416 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RaraP11416 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RaraP11416 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC15.12■□□□□ 0.01
RaraP11416 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
RaraP11416 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
RaraP11416 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
RaraP11416 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Gm18244-201ENSMUST00000219747 1566 ntBASIC15.12■□□□□ 0.01
RaraP11416 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
RaraP11416 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Gm38346-201ENSMUST00000192379 2639 ntBASIC15.12■□□□□ 0.01
RaraP11416 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC15.12■□□□□ 0.01
RaraP11416 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC15.12■□□□□ 0.01
RaraP11416 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 AA619741-201ENSMUST00000195095 646 ntBASIC15.12■□□□□ 0.01
RaraP11416 Gm6443-201ENSMUST00000203599 874 ntBASIC15.12■□□□□ 0.01
RaraP11416 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC15.12■□□□□ 0.01
RaraP11416 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC15.12■□□□□ 0.01
RaraP11416 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
RaraP11416 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
RaraP11416 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RaraP11416 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RaraP11416 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RaraP11416 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
RaraP11416 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
RaraP11416 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RaraP11416 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
RaraP11416 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RaraP11416 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
RaraP11416 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
RaraP11416 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RaraP11416 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RaraP11416 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
RaraP11416 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
RaraP11416 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
RaraP11416 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RaraP11416 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RaraP11416 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RaraP11416 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC15.11■□□□□ 0.01
RaraP11416 Gm2445-201ENSMUST00000182798 989 ntBASIC15.11■□□□□ 0.01
RaraP11416 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC15.11■□□□□ 0.01
RaraP11416 Gm45453-201ENSMUST00000211758 853 ntBASIC15.11■□□□□ 0.01
RaraP11416 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
RaraP11416 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
RaraP11416 AC124549.3-201ENSMUST00000225541 367 ntBASIC15.11■□□□□ 0.01
RaraP11416 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RaraP11416 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
RaraP11416 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RaraP11416 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC15.11■□□□□ 0.01
RaraP11416 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
RaraP11416 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
RaraP11416 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RaraP11416 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RaraP11416 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
RaraP11416 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RaraP11416 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RaraP11416 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 68.1 ms