Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 AC125539.1-202ENSMUST00000226449 670 ntBASIC10.95□□□□□ -0.66
Hoxd3P09027 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
Hoxd3P09027 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC10.95□□□□□ -0.66
Hoxd3P09027 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC10.95□□□□□ -0.66
Hoxd3P09027 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
Hoxd3P09027 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Gm10710-201ENSMUST00000047876 3971 ntBASIC10.95□□□□□ -0.66
Hoxd3P09027 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC10.95□□□□□ -0.66
Hoxd3P09027 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
Hoxd3P09027 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Hoxd3P09027 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Hoxd3P09027 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC10.94□□□□□ -0.66
Hoxd3P09027 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC10.94□□□□□ -0.66
Hoxd3P09027 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC10.94□□□□□ -0.66
Hoxd3P09027 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 Gm15074-201ENSMUST00000117603 936 ntBASIC10.94□□□□□ -0.66
Hoxd3P09027 Gm15460-201ENSMUST00000118147 391 ntBASIC10.94□□□□□ -0.66
Hoxd3P09027 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC10.94□□□□□ -0.66
Hoxd3P09027 Gm14126-201ENSMUST00000122345 395 ntBASIC10.94□□□□□ -0.66
Hoxd3P09027 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC10.94□□□□□ -0.66
Hoxd3P09027 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 Gm42919-201ENSMUST00000197753 1284 ntBASIC10.94□□□□□ -0.66
Hoxd3P09027 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC10.94□□□□□ -0.66
Hoxd3P09027 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Hoxd3P09027 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC10.94□□□□□ -0.66
Hoxd3P09027 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
Hoxd3P09027 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC10.93□□□□□ -0.66
Hoxd3P09027 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Hoxd3P09027 Gm45760-201ENSMUST00000212190 1782 ntBASIC10.93□□□□□ -0.66
Hoxd3P09027 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC10.93□□□□□ -0.66
Hoxd3P09027 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
Hoxd3P09027 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
Hoxd3P09027 Gm6263-201ENSMUST00000120029 1342 ntBASIC10.93□□□□□ -0.66
Hoxd3P09027 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Gm12585-201ENSMUST00000117307 290 ntBASIC10.93□□□□□ -0.66
Hoxd3P09027 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC10.93□□□□□ -0.66
Hoxd3P09027 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC10.93□□□□□ -0.66
Hoxd3P09027 2810433D01Rik-202ENSMUST00000154798 1045 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC10.93□□□□□ -0.66
Hoxd3P09027 Vmn1r-ps144-201ENSMUST00000177291 939 ntBASIC10.93□□□□□ -0.66
Hoxd3P09027 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Gm9522-201ENSMUST00000182394 926 ntBASIC10.93□□□□□ -0.66
Hoxd3P09027 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC10.93□□□□□ -0.66
Hoxd3P09027 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Hoxd3P09027 AC135669.1-201ENSMUST00000213585 412 ntBASIC10.93□□□□□ -0.66
Hoxd3P09027 AC102291.3-201ENSMUST00000226566 405 ntBASIC10.93□□□□□ -0.66
Hoxd3P09027 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC10.93□□□□□ -0.66
Hoxd3P09027 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC10.93□□□□□ -0.66
Hoxd3P09027 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Hoxd3P09027 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms