Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Lmx1bO88609 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Lmx1bO88609 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lmx1bO88609 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Lmx1bO88609 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lmx1bO88609 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lmx1bO88609 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lmx1bO88609 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC12.69□□□□□ -0.38
Lmx1bO88609 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lmx1bO88609 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Lmx1bO88609 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
Lmx1bO88609 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Lmx1bO88609 Gm22189-201ENSMUST00000103822 86 ntBASIC12.69□□□□□ -0.38
Lmx1bO88609 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lmx1bO88609 Gm15460-201ENSMUST00000118147 391 ntBASIC12.69□□□□□ -0.38
Lmx1bO88609 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC12.69□□□□□ -0.38
Lmx1bO88609 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC12.69□□□□□ -0.38
Lmx1bO88609 Ighv1-25-201ENSMUST00000195638 345 ntBASIC12.69□□□□□ -0.38
Lmx1bO88609 Gm7653-201ENSMUST00000214567 508 ntBASIC12.69□□□□□ -0.38
Lmx1bO88609 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC12.69□□□□□ -0.38
Lmx1bO88609 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lmx1bO88609 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lmx1bO88609 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Lmx1bO88609 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Lmx1bO88609 Hist1h2al-201ENSMUST00000091708 339 ntBASIC12.69□□□□□ -0.38
Lmx1bO88609 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Lmx1bO88609 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lmx1bO88609 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
Lmx1bO88609 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Lmx1bO88609 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Lmx1bO88609 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lmx1bO88609 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lmx1bO88609 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Lmx1bO88609 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC12.69□□□□□ -0.38
Lmx1bO88609 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC12.69□□□□□ -0.38
Lmx1bO88609 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lmx1bO88609 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lmx1bO88609 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Lmx1bO88609 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC12.69□□□□□ -0.38
Lmx1bO88609 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC12.69□□□□□ -0.38
Lmx1bO88609 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Lmx1bO88609 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Lmx1bO88609 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC12.68□□□□□ -0.38
Lmx1bO88609 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
Lmx1bO88609 Gm43056-201ENSMUST00000197865 2791 ntBASIC12.68□□□□□ -0.38
Lmx1bO88609 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC12.68□□□□□ -0.38
Lmx1bO88609 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC12.68□□□□□ -0.38
Lmx1bO88609 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Lmx1bO88609 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
Lmx1bO88609 Gm10766-202ENSMUST00000194123 606 ntBASIC12.68□□□□□ -0.38
Lmx1bO88609 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Gm9797-201ENSMUST00000052902 613 ntBASIC12.68□□□□□ -0.38
Lmx1bO88609 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC12.68□□□□□ -0.38
Lmx1bO88609 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC12.68□□□□□ -0.38
Lmx1bO88609 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
Lmx1bO88609 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Lmx1bO88609 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC12.67□□□□□ -0.38
Lmx1bO88609 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC12.67□□□□□ -0.38
Lmx1bO88609 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
Lmx1bO88609 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
Lmx1bO88609 Gm15393-201ENSMUST00000120499 219 ntBASIC12.67□□□□□ -0.38
Lmx1bO88609 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Lmx1bO88609 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC12.67□□□□□ -0.38
Lmx1bO88609 Gm23984-201ENSMUST00000157139 203 ntBASIC12.67□□□□□ -0.38
Lmx1bO88609 Gm9794-201ENSMUST00000202370 423 ntBASIC12.67□□□□□ -0.38
Lmx1bO88609 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC12.67□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 55.9 ms