Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC11.59□□□□□ -0.55
Hmgb3O54879 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 AC154747.3-201ENSMUST00000224471 3470 ntBASIC11.59□□□□□ -0.55
Hmgb3O54879 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Flna-201ENSMUST00000033699 8312 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Hmgb3O54879 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Hmgb3O54879 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC11.59□□□□□ -0.55
Hmgb3O54879 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC11.58□□□□□ -0.55
Hmgb3O54879 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
Hmgb3O54879 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Hmgb3O54879 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hmgb3O54879 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hmgb3O54879 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hmgb3O54879 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hmgb3O54879 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Hmgb3O54879 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hmgb3O54879 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Hmgb3O54879 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC11.58□□□□□ -0.56
Hmgb3O54879 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hmgb3O54879 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hmgb3O54879 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hmgb3O54879 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Hmgb3O54879 AC121801.1-201ENSMUST00000225363 1899 ntBASIC11.58□□□□□ -0.56
Hmgb3O54879 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Hmgb3O54879 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Hmgb3O54879 Gm2308-201ENSMUST00000166539 1004 ntBASIC11.58□□□□□ -0.56
Hmgb3O54879 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC11.58□□□□□ -0.56
Hmgb3O54879 AC160338.1-201ENSMUST00000214232 705 ntBASIC11.58□□□□□ -0.56
Hmgb3O54879 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Hmgb3O54879 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hmgb3O54879 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hmgb3O54879 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hmgb3O54879 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hmgb3O54879 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hmgb3O54879 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hmgb3O54879 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Hmgb3O54879 Tenm2-201ENSMUST00000057207 8298 ntAPPRIS ALT1 TSL 5 BASIC11.58□□□□□ -0.56
Hmgb3O54879 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC11.58□□□□□ -0.56
Hmgb3O54879 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC11.57□□□□□ -0.56
Hmgb3O54879 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
Hmgb3O54879 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Gm15372-201ENSMUST00000120729 834 ntBASIC11.57□□□□□ -0.56
Hmgb3O54879 Gm12895-201ENSMUST00000122214 226 ntBASIC11.57□□□□□ -0.56
Hmgb3O54879 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC11.57□□□□□ -0.56
Hmgb3O54879 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC11.57□□□□□ -0.56
Hmgb3O54879 Gm6659-201ENSMUST00000174752 547 ntBASIC11.57□□□□□ -0.56
Hmgb3O54879 Gm27704-201ENSMUST00000185094 107 ntBASIC11.57□□□□□ -0.56
Hmgb3O54879 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Rbfox2-207ENSMUST00000227533 1041 ntBASIC11.57□□□□□ -0.56
Hmgb3O54879 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC11.57□□□□□ -0.56
Hmgb3O54879 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
Hmgb3O54879 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
Hmgb3O54879 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Zbtb6-202ENSMUST00000112932 5077 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
Hmgb3O54879 Sel1l-204ENSMUST00000167466 5544 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
Hmgb3O54879 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC11.56□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 124.6 ms