Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Gm22175-201ENSMUST00000175007 78 ntBASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Ighv8-7-201ENSMUST00000194349 297 ntBASIC13.23□□□□□ -0.29
Trim3Q9R1R2 AC155729.1-201ENSMUST00000227758 544 ntBASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC13.23□□□□□ -0.29
Trim3Q9R1R2 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Gm29541-201ENSMUST00000191351 678 ntBASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Gm9182-201ENSMUST00000217829 639 ntBASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trim3Q9R1R2 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 AC154767.3-201ENSMUST00000225150 1342 ntBASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Trim3Q9R1R2 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Trim3Q9R1R2 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Trim3Q9R1R2 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Trim3Q9R1R2 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Trim3Q9R1R2 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Trim3Q9R1R2 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Trim3Q9R1R2 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
Trim3Q9R1R2 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Trim3Q9R1R2 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
Trim3Q9R1R2 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC13.21□□□□□ -0.3
Trim3Q9R1R2 Gm6756-201ENSMUST00000180647 1620 ntBASIC13.21□□□□□ -0.3
Trim3Q9R1R2 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trim3Q9R1R2 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trim3Q9R1R2 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trim3Q9R1R2 Ntrk2-208ENSMUST00000225583 2719 ntBASIC13.2□□□□□ -0.3
Trim3Q9R1R2 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trim3Q9R1R2 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trim3Q9R1R2 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trim3Q9R1R2 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Trim3Q9R1R2 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC13.2□□□□□ -0.3
Trim3Q9R1R2 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trim3Q9R1R2 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Trim3Q9R1R2 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Trim3Q9R1R2 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms