Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lima1Q9ERG0 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Lima1Q9ERG0 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC13.87□□□□□ -0.19
Lima1Q9ERG0 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Mir3113-201ENSMUST00000175478 76 ntBASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Gm45683-201ENSMUST00000210825 1247 ntBASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC13.86□□□□□ -0.19
Lima1Q9ERG0 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Gm27525-201ENSMUST00000184465 107 ntBASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Gm6443-201ENSMUST00000203599 874 ntBASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Lima1Q9ERG0 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Gm13233-201ENSMUST00000118760 1443 ntBASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Gm13244-201ENSMUST00000118855 1446 ntBASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Gm15467-201ENSMUST00000120582 445 ntBASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Lima1Q9ERG0 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC13.84□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms