Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps53Q8CCB4 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
Vps53Q8CCB4 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Vps53Q8CCB4 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Vps53Q8CCB4 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps53Q8CCB4 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps53Q8CCB4 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Vps53Q8CCB4 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC16.34■□□□□ 0.21
Vps53Q8CCB4 AC124732.1-201ENSMUST00000221551 910 ntBASIC16.34■□□□□ 0.21
Vps53Q8CCB4 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps53Q8CCB4 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Vps53Q8CCB4 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps53Q8CCB4 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps53Q8CCB4 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Vps53Q8CCB4 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
Vps53Q8CCB4 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
Vps53Q8CCB4 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Vps53Q8CCB4 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Vps53Q8CCB4 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Vps53Q8CCB4 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC16.33■□□□□ 0.21
Vps53Q8CCB4 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Vps53Q8CCB4 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Vps53Q8CCB4 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Vps53Q8CCB4 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Gm3365-201ENSMUST00000216296 1480 ntBASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Vps53Q8CCB4 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Gm14127-201ENSMUST00000117906 678 ntBASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Gm45630-201ENSMUST00000210243 1911 ntBASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Gm7653-201ENSMUST00000214567 508 ntBASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Vps53Q8CCB4 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC16.31■□□□□ 0.2
Vps53Q8CCB4 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 Gm21451-201ENSMUST00000111062 2775 ntBASIC16.31■□□□□ 0.2
Vps53Q8CCB4 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Vps53Q8CCB4 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 55.8 ms