Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC19.7■□□□□ 0.74
Usp47Q8BY87 Gm12416-201ENSMUST00000120911 1008 ntBASIC19.7■□□□□ 0.74
Usp47Q8BY87 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC19.7■□□□□ 0.74
Usp47Q8BY87 AC192088.1-201ENSMUST00000227561 301 ntBASIC19.7■□□□□ 0.74
Usp47Q8BY87 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
Usp47Q8BY87 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp47Q8BY87 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp47Q8BY87 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp47Q8BY87 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp47Q8BY87 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp47Q8BY87 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC19.69■□□□□ 0.74
Usp47Q8BY87 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp47Q8BY87 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp47Q8BY87 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp47Q8BY87 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Usp47Q8BY87 Gm5912-201ENSMUST00000122282 1438 ntBASIC19.69■□□□□ 0.74
Usp47Q8BY87 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp47Q8BY87 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp47Q8BY87 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp47Q8BY87 Gm13689-201ENSMUST00000119360 685 ntBASIC19.69■□□□□ 0.74
Usp47Q8BY87 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC19.69■□□□□ 0.74
Usp47Q8BY87 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Usp47Q8BY87 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC19.69■□□□□ 0.74
Usp47Q8BY87 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp47Q8BY87 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp47Q8BY87 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp47Q8BY87 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp47Q8BY87 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp47Q8BY87 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp47Q8BY87 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC19.68■□□□□ 0.74
Usp47Q8BY87 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp47Q8BY87 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Usp47Q8BY87 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp47Q8BY87 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp47Q8BY87 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
Usp47Q8BY87 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp47Q8BY87 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Usp47Q8BY87 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp47Q8BY87 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp47Q8BY87 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp47Q8BY87 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp47Q8BY87 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Usp47Q8BY87 Gm11918-201ENSMUST00000121660 179 ntBASIC19.68■□□□□ 0.74
Usp47Q8BY87 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC19.68■□□□□ 0.74
Usp47Q8BY87 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Usp47Q8BY87 Gm7446-201ENSMUST00000221035 1240 ntBASIC19.68■□□□□ 0.74
Usp47Q8BY87 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp47Q8BY87 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC19.68■□□□□ 0.74
Usp47Q8BY87 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp47Q8BY87 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp47Q8BY87 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC19.68■□□□□ 0.74
Usp47Q8BY87 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Gm28911-201ENSMUST00000188837 117 ntBASIC19.67■□□□□ 0.74
Usp47Q8BY87 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Gm15163-201ENSMUST00000120749 1302 ntBASIC19.67■□□□□ 0.74
Usp47Q8BY87 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp47Q8BY87 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp47Q8BY87 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Usp47Q8BY87 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp47Q8BY87 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp47Q8BY87 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp47Q8BY87 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp47Q8BY87 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp47Q8BY87 Gm20632-201ENSMUST00000176760 2427 ntBASIC19.66■□□□□ 0.74
Usp47Q8BY87 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC19.66■□□□□ 0.74
Usp47Q8BY87 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp47Q8BY87 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp47Q8BY87 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Usp47Q8BY87 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp47Q8BY87 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Usp47Q8BY87 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Usp47Q8BY87 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC19.66■□□□□ 0.74
Usp47Q8BY87 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 47.9 ms