Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Gm38223-201ENSMUST00000194484 695 ntBASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Gm5161-201ENSMUST00000075243 853 ntBASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Gm24447-201ENSMUST00000083977 338 ntBASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Usp40Q8BWR4 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 AC131068.2-201ENSMUST00000226175 1453 ntBASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Gm44397-201ENSMUST00000195950 113 ntBASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Mmp14-206ENSMUST00000225641 3238 ntBASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Zkscan14-203ENSMUST00000198959 2243 ntBASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Usp40Q8BWR4 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Gm10012-201ENSMUST00000078252 192 ntBASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Gm6091-201ENSMUST00000098307 165 ntBASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Gm12020-201ENSMUST00000119030 2042 ntBASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Usp40Q8BWR4 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Usp40Q8BWR4 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms