Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Trim56Q80VI1 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim56Q80VI1 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim56Q80VI1 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim56Q80VI1 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Trim56Q80VI1 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim56Q80VI1 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
Trim56Q80VI1 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC16.52■□□□□ 0.24
Trim56Q80VI1 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
Trim56Q80VI1 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim56Q80VI1 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC16.52■□□□□ 0.24
Trim56Q80VI1 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC16.52■□□□□ 0.24
Trim56Q80VI1 Gm4971-201ENSMUST00000205991 1108 ntBASIC16.52■□□□□ 0.24
Trim56Q80VI1 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC16.52■□□□□ 0.24
Trim56Q80VI1 AC149294.4-201ENSMUST00000227870 882 ntBASIC16.52■□□□□ 0.24
Trim56Q80VI1 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim56Q80VI1 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim56Q80VI1 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim56Q80VI1 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim56Q80VI1 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim56Q80VI1 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim56Q80VI1 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.23
Trim56Q80VI1 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim56Q80VI1 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Trim56Q80VI1 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim56Q80VI1 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
Trim56Q80VI1 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim56Q80VI1 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim56Q80VI1 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Gm6912-201ENSMUST00000117218 544 ntBASIC16.51■□□□□ 0.23
Trim56Q80VI1 Gm12859-201ENSMUST00000117834 427 ntBASIC16.51■□□□□ 0.23
Trim56Q80VI1 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC16.51■□□□□ 0.23
Trim56Q80VI1 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC16.51■□□□□ 0.23
Trim56Q80VI1 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Gm17795-201ENSMUST00000214505 757 ntBASIC16.51■□□□□ 0.23
Trim56Q80VI1 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trim56Q80VI1 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim56Q80VI1 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim56Q80VI1 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim56Q80VI1 Zkscan14-203ENSMUST00000198959 2243 ntBASIC16.5■□□□□ 0.23
Trim56Q80VI1 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim56Q80VI1 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
Trim56Q80VI1 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC16.5■□□□□ 0.23
Trim56Q80VI1 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim56Q80VI1 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim56Q80VI1 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim56Q80VI1 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim56Q80VI1 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim56Q80VI1 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Trim56Q80VI1 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Trim56Q80VI1 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC16.5■□□□□ 0.23
Trim56Q80VI1 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC16.5■□□□□ 0.23
Trim56Q80VI1 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC16.5■□□□□ 0.23
Trim56Q80VI1 Gm3809-201ENSMUST00000180973 1006 ntBASIC16.5■□□□□ 0.23
Trim56Q80VI1 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC16.5■□□□□ 0.23
Trim56Q80VI1 AL593843.1-201ENSMUST00000195891 145 ntBASIC16.5■□□□□ 0.23
Trim56Q80VI1 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim56Q80VI1 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC16.5■□□□□ 0.23
Trim56Q80VI1 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim56Q80VI1 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim56Q80VI1 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim56Q80VI1 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trim56Q80VI1 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Trim56Q80VI1 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim56Q80VI1 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trim56Q80VI1 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC16.49■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms