Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim27Q62158 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim27Q62158 Gm42769-201ENSMUST00000198576 1659 ntBASIC17.21■□□□□ 0.35
Trim27Q62158 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim27Q62158 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim27Q62158 Mir6956-201ENSMUST00000183598 62 ntBASIC17.21■□□□□ 0.35
Trim27Q62158 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Trim27Q62158 Gm4971-201ENSMUST00000205991 1108 ntBASIC17.21■□□□□ 0.35
Trim27Q62158 AC149294.4-201ENSMUST00000227870 882 ntBASIC17.21■□□□□ 0.35
Trim27Q62158 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim27Q62158 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim27Q62158 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim27Q62158 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim27Q62158 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Trim27Q62158 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Trim27Q62158 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim27Q62158 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim27Q62158 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim27Q62158 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim27Q62158 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim27Q62158 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim27Q62158 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim27Q62158 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim27Q62158 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim27Q62158 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim27Q62158 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim27Q62158 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC17.2■□□□□ 0.34
Trim27Q62158 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC17.2■□□□□ 0.34
Trim27Q62158 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim27Q62158 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim27Q62158 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Trim27Q62158 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim27Q62158 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Trim27Q62158 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC17.2■□□□□ 0.34
Trim27Q62158 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim27Q62158 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Trim27Q62158 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim27Q62158 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim27Q62158 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim27Q62158 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Trim27Q62158 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim27Q62158 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim27Q62158 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
Trim27Q62158 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim27Q62158 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim27Q62158 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim27Q62158 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim27Q62158 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim27Q62158 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim27Q62158 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim27Q62158 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Trim27Q62158 Gm3436-201ENSMUST00000179930 840 ntBASIC17.19■□□□□ 0.34
Trim27Q62158 Ighv1-51-201ENSMUST00000192903 354 ntBASIC17.19■□□□□ 0.34
Trim27Q62158 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim27Q62158 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim27Q62158 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim27Q62158 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim27Q62158 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trim27Q62158 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim27Q62158 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
Trim27Q62158 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim27Q62158 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim27Q62158 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trim27Q62158 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim27Q62158 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim27Q62158 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Trim27Q62158 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim27Q62158 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim27Q62158 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim27Q62158 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trim27Q62158 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim27Q62158 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim27Q62158 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trim27Q62158 Gm27306-201ENSMUST00000183970 107 ntBASIC17.18■□□□□ 0.34
Trim27Q62158 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Trim27Q62158 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC17.18■□□□□ 0.34
Trim27Q62158 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim27Q62158 Matn2-206ENSMUST00000228570 2798 ntBASIC17.18■□□□□ 0.34
Trim27Q62158 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim27Q62158 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trim27Q62158 Il17rd-203ENSMUST00000225146 3366 ntBASIC17.18■□□□□ 0.34
Trim27Q62158 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim27Q62158 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim27Q62158 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trim27Q62158 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trim27Q62158 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC17.18■□□□□ 0.34
Trim27Q62158 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC17.18■□□□□ 0.34
Trim27Q62158 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim27Q62158 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Trim27Q62158 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
Trim27Q62158 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
Trim27Q62158 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Trim27Q62158 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim27Q62158 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim27Q62158 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim27Q62158 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
Trim27Q62158 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trim27Q62158 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trim27Q62158 Gm4875-201ENSMUST00000118257 786 ntBASIC17.17■□□□□ 0.34
Trim27Q62158 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 57 ms