Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
Upf3aQ3ULJ3 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
Upf3aQ3ULJ3 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Upf3aQ3ULJ3 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Upf3aQ3ULJ3 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Upf3aQ3ULJ3 AC161252.3-201ENSMUST00000225465 1549 ntBASIC14.71□□□□□ -0.06
Upf3aQ3ULJ3 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Upf3aQ3ULJ3 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Upf3aQ3ULJ3 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.06
Upf3aQ3ULJ3 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Gm14730-201ENSMUST00000122378 1045 ntBASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Gm24196-201ENSMUST00000179161 110 ntBASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Gm27731-201ENSMUST00000185192 107 ntBASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Gm29649-201ENSMUST00000185649 419 ntBASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Gm44397-201ENSMUST00000195950 113 ntBASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Gm7498-201ENSMUST00000203282 1084 ntBASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 AC140451.2-201ENSMUST00000228030 664 ntBASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Upf3aQ3ULJ3 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Gm13859-201ENSMUST00000119936 1423 ntBASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Trav4d-2-201ENSMUST00000120914 335 ntBASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Gm8062-201ENSMUST00000139696 444 ntBASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Gm38223-201ENSMUST00000194484 695 ntBASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Gm9728-201ENSMUST00000200197 1055 ntBASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Gm45331-201ENSMUST00000209868 554 ntBASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 AC166997.1-201ENSMUST00000225122 572 ntBASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
Upf3aQ3ULJ3 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 Gm38319-201ENSMUST00000194537 1266 ntBASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 Gm42442-201ENSMUST00000197951 1133 ntBASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 AC131690.1-201ENSMUST00000218406 374 ntBASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Upf3aQ3ULJ3 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms