Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Gm9385-201ENSMUST00000117563 472 ntBASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Gm44492-201ENSMUST00000197012 141 ntBASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Gm6443-201ENSMUST00000203599 874 ntBASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Gm45747-201ENSMUST00000212203 999 ntBASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Gm8096-201ENSMUST00000209921 1591 ntBASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Tbr1-201ENSMUST00000048934 3977 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Gm9252-201ENSMUST00000172364 1602 ntBASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Ptchd3Q0EEE2 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 CT025610.1-201ENSMUST00000224552 1786 ntBASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Gm18244-201ENSMUST00000219747 1566 ntBASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Gm27525-201ENSMUST00000184465 107 ntBASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 AC159295.1-201ENSMUST00000225326 940 ntBASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Gm6159-201ENSMUST00000191249 1724 ntBASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Ptchd3Q0EEE2 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Gm37644-201ENSMUST00000192190 2270 ntBASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Gm11779-201ENSMUST00000118541 368 ntBASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 AC154572.2-201ENSMUST00000225105 997 ntBASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 AC164565.1-201ENSMUST00000217520 1484 ntBASIC13.54□□□□□ -0.24
Ptchd3Q0EEE2 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms