Protein–RNA interactions for Protein: Q03358

Msx2, Homeobox protein MSX-2, mousemouse

Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx2Q03358 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx2Q03358 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx2Q03358 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Msx2Q03358 Gm14752-201ENSMUST00000120719 2075 ntBASIC13.62□□□□□ -0.23
Msx2Q03358 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx2Q03358 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx2Q03358 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Msx2Q03358 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Msx2Q03358 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx2Q03358 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC13.62□□□□□ -0.23
Msx2Q03358 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx2Q03358 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Msx2Q03358 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx2Q03358 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Msx2Q03358 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
Msx2Q03358 Gm16198-201ENSMUST00000118766 670 ntBASIC13.62□□□□□ -0.23
Msx2Q03358 Gm6184-201ENSMUST00000120403 1261 ntBASIC13.62□□□□□ -0.23
Msx2Q03358 Gm7862-201ENSMUST00000121461 292 ntBASIC13.62□□□□□ -0.23
Msx2Q03358 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Msx2Q03358 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC13.62□□□□□ -0.23
Msx2Q03358 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx2Q03358 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx2Q03358 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC13.62□□□□□ -0.23
Msx2Q03358 AC131709.1-201ENSMUST00000224731 1180 ntBASIC13.62□□□□□ -0.23
Msx2Q03358 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Msx2Q03358 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx2Q03358 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Msx2Q03358 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Msx2Q03358 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
Msx2Q03358 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Msx2Q03358 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC13.61□□□□□ -0.23
Msx2Q03358 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Msx2Q03358 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC13.61□□□□□ -0.23
Msx2Q03358 Gm13036-201ENSMUST00000117799 748 ntBASIC13.61□□□□□ -0.23
Msx2Q03358 Gm11452-201ENSMUST00000122376 690 ntBASIC13.61□□□□□ -0.23
Msx2Q03358 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC13.61□□□□□ -0.23
Msx2Q03358 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC13.61□□□□□ -0.23
Msx2Q03358 Gm2272-201ENSMUST00000194903 582 ntBASIC13.61□□□□□ -0.23
Msx2Q03358 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC13.61□□□□□ -0.23
Msx2Q03358 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC13.61□□□□□ -0.23
Msx2Q03358 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC13.61□□□□□ -0.23
Msx2Q03358 AV026068-213ENSMUST00000223675 1171 ntBASIC13.61□□□□□ -0.23
Msx2Q03358 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Rps4l-201ENSMUST00000071745 943 ntBASIC13.61□□□□□ -0.23
Msx2Q03358 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC13.61□□□□□ -0.23
Msx2Q03358 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Msx2Q03358 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Msx2Q03358 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Msx2Q03358 Gm37133-201ENSMUST00000192705 1922 ntBASIC13.6□□□□□ -0.23
Msx2Q03358 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msx2Q03358 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC13.6□□□□□ -0.23
Msx2Q03358 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msx2Q03358 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msx2Q03358 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Msx2Q03358 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msx2Q03358 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msx2Q03358 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Msx2Q03358 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msx2Q03358 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC13.6□□□□□ -0.23
Msx2Q03358 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Msx2Q03358 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC13.6□□□□□ -0.23
Msx2Q03358 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC13.6□□□□□ -0.23
Msx2Q03358 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Msx2Q03358 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC13.6□□□□□ -0.23
Msx2Q03358 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msx2Q03358 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Msx2Q03358 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Msx2Q03358 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 73.7 ms