Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Rfx1P48377 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx1P48377 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx1P48377 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC16.76■□□□□ 0.27
Rfx1P48377 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC16.76■□□□□ 0.27
Rfx1P48377 Gm7461-201ENSMUST00000058918 827 ntBASIC16.76■□□□□ 0.27
Rfx1P48377 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx1P48377 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
Rfx1P48377 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx1P48377 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx1P48377 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Rfx1P48377 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx1P48377 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx1P48377 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx1P48377 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx1P48377 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx1P48377 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx1P48377 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx1P48377 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC16.75■□□□□ 0.27
Rfx1P48377 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC16.75■□□□□ 0.27
Rfx1P48377 CT025555.1-201ENSMUST00000225901 1217 ntBASIC16.75■□□□□ 0.27
Rfx1P48377 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 Gm13410-201ENSMUST00000117058 1415 ntBASIC16.75■□□□□ 0.27
Rfx1P48377 Gm9109-201ENSMUST00000120254 1405 ntBASIC16.75■□□□□ 0.27
Rfx1P48377 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC16.75■□□□□ 0.27
Rfx1P48377 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Rfx1P48377 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx1P48377 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 Gm14752-201ENSMUST00000120719 2075 ntBASIC16.74■□□□□ 0.27
Rfx1P48377 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Rfx1P48377 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 Gm9347-201ENSMUST00000211473 1607 ntBASIC16.74■□□□□ 0.27
Rfx1P48377 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC16.74■□□□□ 0.27
Rfx1P48377 Gm12350-201ENSMUST00000121208 462 ntBASIC16.74■□□□□ 0.27
Rfx1P48377 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 Gm43332-201ENSMUST00000202511 1044 ntBASIC16.74■□□□□ 0.27
Rfx1P48377 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC16.74■□□□□ 0.27
Rfx1P48377 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Rfx1P48377 Gm37133-201ENSMUST00000192705 1922 ntBASIC16.74■□□□□ 0.27
Rfx1P48377 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Rfx1P48377 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC16.74■□□□□ 0.27
Rfx1P48377 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx1P48377 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx1P48377 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
Rfx1P48377 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx1P48377 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx1P48377 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Rfx1P48377 Nudt18-203ENSMUST00000228768 1578 ntBASIC16.73■□□□□ 0.27
Rfx1P48377 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx1P48377 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
Rfx1P48377 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx1P48377 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx1P48377 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx1P48377 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx1P48377 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx1P48377 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx1P48377 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Rfx1P48377 Gm12953-201ENSMUST00000138426 751 ntTSL 2 BASIC16.73■□□□□ 0.27
Rfx1P48377 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Rfx1P48377 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC16.73■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms