Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col18a1P39061 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col18a1P39061 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col18a1P39061 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col18a1P39061 Gm38197-201ENSMUST00000192320 2122 ntBASIC18.18■□□□□ 0.5
Col18a1P39061 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col18a1P39061 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC18.18■□□□□ 0.5
Col18a1P39061 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col18a1P39061 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Col18a1P39061 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col18a1P39061 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Col18a1P39061 Avpr2-203ENSMUST00000114395 936 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Col18a1P39061 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col18a1P39061 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col18a1P39061 Gm8856-201ENSMUST00000185254 1144 ntBASIC18.17■□□□□ 0.5
Col18a1P39061 Ighv5-7-201ENSMUST00000192302 244 ntBASIC18.17■□□□□ 0.5
Col18a1P39061 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Col18a1P39061 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col18a1P39061 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col18a1P39061 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
Col18a1P39061 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col18a1P39061 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col18a1P39061 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col18a1P39061 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC18.17■□□□□ 0.5
Col18a1P39061 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col18a1P39061 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
Col18a1P39061 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Col18a1P39061 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Col18a1P39061 Gm45224-201ENSMUST00000208203 414 ntBASIC18.17■□□□□ 0.5
Col18a1P39061 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col18a1P39061 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col18a1P39061 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Col18a1P39061 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col18a1P39061 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col18a1P39061 Gm43399-201ENSMUST00000202546 2374 ntBASIC18.16■□□□□ 0.5
Col18a1P39061 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col18a1P39061 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col18a1P39061 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC18.16■□□□□ 0.5
Col18a1P39061 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col18a1P39061 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Col18a1P39061 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col18a1P39061 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC18.16■□□□□ 0.5
Col18a1P39061 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col18a1P39061 Gm5597-201ENSMUST00000182353 1193 ntBASIC18.16■□□□□ 0.5
Col18a1P39061 Gm3508-201ENSMUST00000186012 792 ntBASIC18.16■□□□□ 0.5
Col18a1P39061 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col18a1P39061 AC161537.1-201ENSMUST00000226199 1015 ntBASIC18.16■□□□□ 0.5
Col18a1P39061 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col18a1P39061 Gm12500-202ENSMUST00000186471 2428 ntBASIC18.16■□□□□ 0.5
Col18a1P39061 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col18a1P39061 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col18a1P39061 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col18a1P39061 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col18a1P39061 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Col18a1P39061 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Col18a1P39061 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col18a1P39061 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Col18a1P39061 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC18.15■□□□□ 0.5
Col18a1P39061 Gm9550-201ENSMUST00000161130 862 ntBASIC18.15■□□□□ 0.5
Col18a1P39061 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col18a1P39061 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col18a1P39061 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col18a1P39061 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Col18a1P39061 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Col18a1P39061 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col18a1P39061 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col18a1P39061 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col18a1P39061 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Col18a1P39061 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC18.15■□□□□ 0.5
Col18a1P39061 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC18.15■□□□□ 0.5
Col18a1P39061 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Col18a1P39061 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Col18a1P39061 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
Col18a1P39061 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.5
Col18a1P39061 Gm15547-201ENSMUST00000122152 333 ntBASIC18.14■□□□□ 0.5
Col18a1P39061 4930583K01Rik-201ENSMUST00000138180 925 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Col18a1P39061 Gm2546-201ENSMUST00000182630 991 ntBASIC18.14■□□□□ 0.5
Col18a1P39061 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC18.14■□□□□ 0.5
Col18a1P39061 Gm3096-201ENSMUST00000185770 364 ntBASIC18.14■□□□□ 0.5
Col18a1P39061 Gm45118-201ENSMUST00000208928 825 ntBASIC18.14■□□□□ 0.5
Col18a1P39061 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC18.14■□□□□ 0.5
Col18a1P39061 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Col18a1P39061 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Col18a1P39061 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC18.14■□□□□ 0.5
Col18a1P39061 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Col18a1P39061 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Col18a1P39061 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Col18a1P39061 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col18a1P39061 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col18a1P39061 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col18a1P39061 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col18a1P39061 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col18a1P39061 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col18a1P39061 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col18a1P39061 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
Col18a1P39061 Gm16481-201ENSMUST00000119074 1227 ntBASIC18.14■□□□□ 0.49
Col18a1P39061 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC18.14■□□□□ 0.49
Col18a1P39061 Gm9555-201ENSMUST00000200908 583 ntBASIC18.14■□□□□ 0.49
Col18a1P39061 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Col18a1P39061 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 45.5 ms