Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm11873-201ENSMUST00000117877 1304 ntBASIC11.36□□□□□ -0.59
Cdx1P18111 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC11.36□□□□□ -0.59
Cdx1P18111 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Cdx1P18111 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC11.36□□□□□ -0.59
Cdx1P18111 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC11.36□□□□□ -0.59
Cdx1P18111 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC11.36□□□□□ -0.59
Cdx1P18111 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC11.36□□□□□ -0.59
Cdx1P18111 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC11.36□□□□□ -0.59
Cdx1P18111 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC11.36□□□□□ -0.59
Cdx1P18111 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC11.36□□□□□ -0.59
Cdx1P18111 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
Cdx1P18111 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Cdx1P18111 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC11.36□□□□□ -0.59
Cdx1P18111 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Gm18263-201ENSMUST00000220846 1928 ntBASIC11.36□□□□□ -0.59
Cdx1P18111 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
Cdx1P18111 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC11.36□□□□□ -0.59
Cdx1P18111 Osbpl7-201ENSMUST00000090020 3771 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC11.36□□□□□ -0.59
Cdx1P18111 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Neurod6-201ENSMUST00000044767 2150 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC11.35□□□□□ -0.59
Cdx1P18111 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC11.35□□□□□ -0.59
Cdx1P18111 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Gm38273-201ENSMUST00000194987 2382 ntBASIC11.35□□□□□ -0.59
Cdx1P18111 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC11.35□□□□□ -0.59
Cdx1P18111 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
Cdx1P18111 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
Cdx1P18111 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC11.35□□□□□ -0.59
Cdx1P18111 Gm14822-201ENSMUST00000122247 291 ntBASIC11.35□□□□□ -0.59
Cdx1P18111 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC11.35□□□□□ -0.59
Cdx1P18111 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC11.35□□□□□ -0.59
Cdx1P18111 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Mir3113-201ENSMUST00000175478 76 ntBASIC11.35□□□□□ -0.59
Cdx1P18111 Gm27646-201ENSMUST00000183989 110 ntBASIC11.35□□□□□ -0.59
Cdx1P18111 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC11.35□□□□□ -0.59
Cdx1P18111 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC11.35□□□□□ -0.59
Cdx1P18111 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
Cdx1P18111 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
Cdx1P18111 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
Cdx1P18111 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
Cdx1P18111 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC11.34□□□□□ -0.59
Cdx1P18111 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
Cdx1P18111 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC11.34□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms