Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Chmp6P0C0A3 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC15.3■□□□□ 0.04
Chmp6P0C0A3 Gm44645-201ENSMUST00000205492 1653 ntBASIC15.3■□□□□ 0.04
Chmp6P0C0A3 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Chmp6P0C0A3 AC159114.1-201ENSMUST00000220349 266 ntBASIC15.3■□□□□ 0.04
Chmp6P0C0A3 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Chmp6P0C0A3 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
Chmp6P0C0A3 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Chmp6P0C0A3 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Chmp6P0C0A3 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Chmp6P0C0A3 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Chmp6P0C0A3 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Chmp6P0C0A3 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Chmp6P0C0A3 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Chmp6P0C0A3 Gm28182-201ENSMUST00000188354 2477 ntBASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Mmp14-206ENSMUST00000225641 3238 ntBASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 AC159621.2-201ENSMUST00000223519 1326 ntBASIC15.29■□□□□ 0.04
Chmp6P0C0A3 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Gm24543-201ENSMUST00000103867 82 ntBASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Gm5566-201ENSMUST00000116118 459 ntBASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Gm28630-201ENSMUST00000187806 498 ntBASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Gm10576-201ENSMUST00000191927 825 ntBASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 AC154621.1-201ENSMUST00000226155 1119 ntBASIC15.29■□□□□ 0.04
Chmp6P0C0A3 AC155729.1-201ENSMUST00000227758 544 ntBASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Chmp6P0C0A3 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Cacna2d1-202ENSMUST00000078272 7311 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Gm10275-202ENSMUST00000168697 495 ntBASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Gm27631-201ENSMUST00000184163 466 ntBASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Gm6888-201ENSMUST00000221983 706 ntBASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Rbfox2-208ENSMUST00000227930 1218 ntBASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Gm10275-201ENSMUST00000092620 635 ntBASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Chmp6P0C0A3 Gm14451-201ENSMUST00000121581 1542 ntBASIC15.27■□□□□ 0.04
Chmp6P0C0A3 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC15.27■□□□□ 0.04
Chmp6P0C0A3 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC15.27■□□□□ 0.04
Chmp6P0C0A3 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Chmp6P0C0A3 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 90.8 ms