Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
Chd3B1AR17 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Chd3B1AR17 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Chd3B1AR17 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chd3B1AR17 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chd3B1AR17 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Chd3B1AR17 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chd3B1AR17 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
Chd3B1AR17 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chd3B1AR17 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Chd3B1AR17 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Chd3B1AR17 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Chd3B1AR17 Gm27892-201ENSMUST00000185017 106 ntBASIC13.7□□□□□ -0.22
Chd3B1AR17 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC13.7□□□□□ -0.22
Chd3B1AR17 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Chd3B1AR17 Gm6983-201ENSMUST00000214912 628 ntBASIC13.7□□□□□ -0.22
Chd3B1AR17 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chd3B1AR17 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chd3B1AR17 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chd3B1AR17 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chd3B1AR17 AC161252.3-201ENSMUST00000225465 1549 ntBASIC13.7□□□□□ -0.22
Chd3B1AR17 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
Chd3B1AR17 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chd3B1AR17 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Chd3B1AR17 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chd3B1AR17 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chd3B1AR17 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chd3B1AR17 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chd3B1AR17 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
Chd3B1AR17 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Chd3B1AR17 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chd3B1AR17 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chd3B1AR17 Zkscan14-203ENSMUST00000198959 2243 ntBASIC13.7□□□□□ -0.22
Chd3B1AR17 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chd3B1AR17 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chd3B1AR17 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC13.7□□□□□ -0.22
Chd3B1AR17 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC13.7□□□□□ -0.22
Chd3B1AR17 Gm21470-201ENSMUST00000187680 696 ntBASIC13.7□□□□□ -0.22
Chd3B1AR17 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC13.7□□□□□ -0.22
Chd3B1AR17 Gm5356-201ENSMUST00000093326 615 ntBASIC13.7□□□□□ -0.22
Chd3B1AR17 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC13.7□□□□□ -0.22
Chd3B1AR17 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Chd3B1AR17 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC13.69□□□□□ -0.22
Chd3B1AR17 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC13.69□□□□□ -0.22
Chd3B1AR17 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Gm8337-201ENSMUST00000187358 1938 ntBASIC13.69□□□□□ -0.22
Chd3B1AR17 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Chd3B1AR17 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Gm15240-201ENSMUST00000118156 720 ntBASIC13.69□□□□□ -0.22
Chd3B1AR17 Gm13689-201ENSMUST00000119360 685 ntBASIC13.69□□□□□ -0.22
Chd3B1AR17 Gm12960-201ENSMUST00000120017 1066 ntBASIC13.69□□□□□ -0.22
Chd3B1AR17 Gm13385-201ENSMUST00000121089 220 ntBASIC13.69□□□□□ -0.22
Chd3B1AR17 Gm15376-201ENSMUST00000122258 783 ntBASIC13.69□□□□□ -0.22
Chd3B1AR17 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC13.69□□□□□ -0.22
Chd3B1AR17 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC13.69□□□□□ -0.22
Chd3B1AR17 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC13.69□□□□□ -0.22
Chd3B1AR17 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC13.69□□□□□ -0.22
Chd3B1AR17 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
Chd3B1AR17 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
Chd3B1AR17 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC13.69□□□□□ -0.22
Chd3B1AR17 Gm45605-201ENSMUST00000210265 4269 ntBASIC13.69□□□□□ -0.22
Chd3B1AR17 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Gm9347-201ENSMUST00000211473 1607 ntBASIC13.69□□□□□ -0.22
Chd3B1AR17 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Chd3B1AR17 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC13.69□□□□□ -0.22
Chd3B1AR17 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC13.68□□□□□ -0.22
Chd3B1AR17 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
Chd3B1AR17 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Chd3B1AR17 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms