Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 AC135637.1-201ENSMUST00000227750 365 ntBASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Sin3b-201ENSMUST00000004494 4115 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 AI314180-202ENSMUST00000102889 7045 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Gm29361-201ENSMUST00000183323 2000 ntBASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Smco4Q9JIS3 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Sptbn2-201ENSMUST00000008991 8251 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Gm5939-201ENSMUST00000119613 2874 ntBASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Wdr33-201ENSMUST00000025264 6206 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
Smco4Q9JIS3 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Smco4Q9JIS3 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms