Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Gm14719-201ENSMUST00000121891 340 ntBASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 AC132863.2-201ENSMUST00000226643 799 ntBASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Vps28Q9D1C8 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Gm45630-201ENSMUST00000210243 1911 ntBASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Gm27437-201ENSMUST00000183429 107 ntBASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Vps28Q9D1C8 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Gm7820-201ENSMUST00000121012 1052 ntBASIC14.38□□□□□ -0.11
Vps28Q9D1C8 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Vps28Q9D1C8 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms