Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Gm6916-202ENSMUST00000205523 195 ntBASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 AC124732.2-201ENSMUST00000221977 316 ntBASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 Gm15889-202ENSMUST00000212669 2443 ntBASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 AC154767.3-201ENSMUST00000225150 1342 ntBASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Ddx56Q9D0R4 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 Mir1897-201ENSMUST00000122581 272 ntBASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 Gm25144-201ENSMUST00000179561 110 ntBASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 Gm25352-201ENSMUST00000179815 110 ntBASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 Gm27533-201ENSMUST00000183800 152 ntBASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 Shd-206ENSMUST00000225145 998 ntBASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC14.77□□□□□ -0.05
Ddx56Q9D0R4 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Gm15653-201ENSMUST00000119247 907 ntBASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 CT030704.2-201ENSMUST00000228887 494 ntBASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Ddx56Q9D0R4 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms