Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Gm7775-201ENSMUST00000218871 853 ntBASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Ushbp1Q8R370 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
Ushbp1Q8R370 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Gm12490-201ENSMUST00000120255 560 ntBASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Gm27533-201ENSMUST00000183800 152 ntBASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Gm27838-201ENSMUST00000184829 128 ntBASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC15.75■□□□□ 0.11
Ushbp1Q8R370 AC132467.2-202ENSMUST00000227726 559 ntBASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Gm3365-201ENSMUST00000216296 1480 ntBASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Ushbp1Q8R370 AC126549.2-201ENSMUST00000223997 1976 ntBASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Ushbp1Q8R370 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Gm43399-201ENSMUST00000202546 2374 ntBASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Gm15957-201ENSMUST00000118893 974 ntBASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Ushbp1Q8R370 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Gm14928-201ENSMUST00000120198 477 ntBASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Gm27680-201ENSMUST00000184192 160 ntBASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Gm44608-201ENSMUST00000206827 855 ntBASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ushbp1Q8R370 AC121598.1-201ENSMUST00000228224 1019 ntBASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 55.6 ms