Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Gm15487-201ENSMUST00000122373 465 ntBASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Gm27680-201ENSMUST00000184192 160 ntBASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Gm37230-201ENSMUST00000194491 818 ntBASIC16.37■□□□□ 0.21
Vps53Q8CCB4 AC158529.1-201ENSMUST00000223618 239 ntBASIC16.37■□□□□ 0.21
Vps53Q8CCB4 AC132863.2-201ENSMUST00000226643 799 ntBASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Gm42466-201ENSMUST00000202099 1301 ntBASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Gm9252-201ENSMUST00000172364 1602 ntBASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Vps53Q8CCB4 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Gm5479-201ENSMUST00000160578 435 ntBASIC16.36■□□□□ 0.21
Vps53Q8CCB4 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Gm27838-201ENSMUST00000184829 128 ntBASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Ighv8-7-201ENSMUST00000194349 297 ntBASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Gm44344-201ENSMUST00000200287 129 ntBASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Gm44855-201ENSMUST00000205725 362 ntBASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Gm45098-201ENSMUST00000207179 657 ntBASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Syt7-204ENSMUST00000223586 1344 ntBASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Vps53Q8CCB4 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Gm27533-201ENSMUST00000183800 152 ntBASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Gm7775-201ENSMUST00000218871 853 ntBASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Vps53Q8CCB4 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps53Q8CCB4 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps53Q8CCB4 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps53Q8CCB4 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps53Q8CCB4 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Vps53Q8CCB4 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms