Protein–RNA interactions for Protein: Q80SX8

Pif1, ATP-dependent DNA helicase PIF1, mousemouse

Predictions only

Length 650 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pif1Q80SX8 Gm5354-201ENSMUST00000182417 973 ntBASIC13□□□□□ -0.33
Pif1Q80SX8 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Pif1Q80SX8 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC13□□□□□ -0.33
Pif1Q80SX8 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC13□□□□□ -0.33
Pif1Q80SX8 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC13□□□□□ -0.33
Pif1Q80SX8 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC13□□□□□ -0.33
Pif1Q80SX8 AC125350.2-201ENSMUST00000224737 727 ntBASIC13□□□□□ -0.33
Pif1Q80SX8 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC13□□□□□ -0.33
Pif1Q80SX8 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Pif1Q80SX8 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC13□□□□□ -0.33
Pif1Q80SX8 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
Pif1Q80SX8 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Pif1Q80SX8 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Pif1Q80SX8 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Pif1Q80SX8 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Mbnl2-204ENSMUST00000227012 2390 ntBASIC12.99□□□□□ -0.33
Pif1Q80SX8 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Gm12960-201ENSMUST00000120017 1066 ntBASIC12.99□□□□□ -0.33
Pif1Q80SX8 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Gm9002-201ENSMUST00000178437 499 ntBASIC12.99□□□□□ -0.33
Pif1Q80SX8 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Pif1Q80SX8 AC238811.3-201ENSMUST00000225422 709 ntBASIC12.99□□□□□ -0.33
Pif1Q80SX8 AC159006.1-201ENSMUST00000226396 258 ntBASIC12.99□□□□□ -0.33
Pif1Q80SX8 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC12.99□□□□□ -0.33
Pif1Q80SX8 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC12.98□□□□□ -0.33
Pif1Q80SX8 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Gm6266-201ENSMUST00000203844 806 ntBASIC12.98□□□□□ -0.33
Pif1Q80SX8 Gm44719-201ENSMUST00000206404 149 ntBASIC12.98□□□□□ -0.33
Pif1Q80SX8 Gm2594-201ENSMUST00000214774 742 ntBASIC12.98□□□□□ -0.33
Pif1Q80SX8 AC154806.6-201ENSMUST00000228192 202 ntBASIC12.98□□□□□ -0.33
Pif1Q80SX8 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Pif1Q80SX8 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Gm8131-201ENSMUST00000213783 1570 ntBASIC12.98□□□□□ -0.33
Pif1Q80SX8 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Pif1Q80SX8 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Pif1Q80SX8 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Pif1Q80SX8 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Pif1Q80SX8 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Pif1Q80SX8 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Pif1Q80SX8 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Pif1Q80SX8 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC12.97□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 50.4 ms