Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Rnf220Q6PDX6 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Gm10499-201ENSMUST00000174094 934 ntBASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Rnf220Q6PDX6 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Gm18489-201ENSMUST00000172565 551 ntBASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Rnf220Q6PDX6 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Gm37437-201ENSMUST00000194451 1937 ntBASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 AC154595.3-201ENSMUST00000224579 384 ntBASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC13.29□□□□□ -0.28
Rnf220Q6PDX6 Mxra8os-201ENSMUST00000097740 687 ntBASIC13.29□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms