Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Gm9449-201ENSMUST00000207265 1011 ntBASIC13.39□□□□□ -0.27
Nr1h4Q60641 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Nr1h4Q60641 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Nr1h4Q60641 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Nr1h4Q60641 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Nr1h4Q60641 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Nr1h4Q60641 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Nr1h4Q60641 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Nr1h4Q60641 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Nr1h4Q60641 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Nr1h4Q60641 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Nr1h4Q60641 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Nr1h4Q60641 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Nr1h4Q60641 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Nr1h4Q60641 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Nr1h4Q60641 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC13.38□□□□□ -0.27
Nr1h4Q60641 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Nr1h4Q60641 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
Nr1h4Q60641 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC13.38□□□□□ -0.27
Nr1h4Q60641 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC13.38□□□□□ -0.27
Nr1h4Q60641 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC13.38□□□□□ -0.27
Nr1h4Q60641 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Nr1h4Q60641 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Nr1h4Q60641 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Nr1h4Q60641 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Nr1h4Q60641 AC126549.2-201ENSMUST00000223997 1976 ntBASIC13.38□□□□□ -0.27
Nr1h4Q60641 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Nr1h4Q60641 AC121801.1-201ENSMUST00000225363 1899 ntBASIC13.38□□□□□ -0.27
Nr1h4Q60641 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Gm12350-201ENSMUST00000121208 462 ntBASIC13.37□□□□□ -0.27
Nr1h4Q60641 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC13.37□□□□□ -0.27
Nr1h4Q60641 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nr1h4Q60641 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Nr1h4Q60641 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nr1h4Q60641 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nr1h4Q60641 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nr1h4Q60641 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Nr1h4Q60641 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nr1h4Q60641 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nr1h4Q60641 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nr1h4Q60641 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Nr1h4Q60641 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nr1h4Q60641 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC13.36□□□□□ -0.27
Nr1h4Q60641 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Nr1h4Q60641 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Nr1h4Q60641 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms