Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Gm6539-201ENSMUST00000119157 1064 ntBASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Gm6222-201ENSMUST00000120787 396 ntBASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Gm43474-201ENSMUST00000196415 774 ntBASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 AC121598.1-201ENSMUST00000228224 1019 ntBASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Gm42471-201ENSMUST00000201457 1865 ntBASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Trav5d-4Q5R1F6 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Gm9824-201ENSMUST00000178707 561 ntBASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 AC149588.3-201ENSMUST00000227515 150 ntBASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav5d-4Q5R1F6 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC12.08□□□□□ -0.47
Trav5d-4Q5R1F6 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.47
Trav5d-4Q5R1F6 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.47
Trav5d-4Q5R1F6 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Gm25287-201ENSMUST00000103846 110 ntBASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Gm22918-201ENSMUST00000103855 110 ntBASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Gm13823-201ENSMUST00000119930 345 ntBASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trav5d-4Q5R1F6 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms