Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Col17a1Q07563 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col17a1Q07563 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC21.11■□□□□ 0.97
Col17a1Q07563 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Col17a1Q07563 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC21.11■□□□□ 0.97
Col17a1Q07563 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC21.11■□□□□ 0.97
Col17a1Q07563 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC21.11■□□□□ 0.97
Col17a1Q07563 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col17a1Q07563 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col17a1Q07563 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC21.1■□□□□ 0.97
Col17a1Q07563 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col17a1Q07563 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
Col17a1Q07563 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC21.1■□□□□ 0.97
Col17a1Q07563 Gm5597-201ENSMUST00000182353 1193 ntBASIC21.1■□□□□ 0.97
Col17a1Q07563 Gm5369-201ENSMUST00000217499 588 ntBASIC21.1■□□□□ 0.97
Col17a1Q07563 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col17a1Q07563 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC21.1■□□□□ 0.97
Col17a1Q07563 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col17a1Q07563 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col17a1Q07563 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col17a1Q07563 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col17a1Q07563 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Col17a1Q07563 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col17a1Q07563 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC21.1■□□□□ 0.97
Col17a1Q07563 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
Col17a1Q07563 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col17a1Q07563 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col17a1Q07563 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col17a1Q07563 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col17a1Q07563 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col17a1Q07563 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col17a1Q07563 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Col17a1Q07563 Mir1901-201ENSMUST00000122616 78 ntBASIC21.09■□□□□ 0.97
Col17a1Q07563 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col17a1Q07563 Mir6923-201ENSMUST00000184592 72 ntBASIC21.09■□□□□ 0.97
Col17a1Q07563 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Col17a1Q07563 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC21.09■□□□□ 0.97
Col17a1Q07563 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC21.09■□□□□ 0.97
Col17a1Q07563 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col17a1Q07563 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col17a1Q07563 Gm10785-201ENSMUST00000156242 1583 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col17a1Q07563 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
Col17a1Q07563 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col17a1Q07563 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col17a1Q07563 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col17a1Q07563 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col17a1Q07563 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col17a1Q07563 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col17a1Q07563 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col17a1Q07563 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC21.09■□□□□ 0.97
Col17a1Q07563 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col17a1Q07563 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
Col17a1Q07563 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col17a1Q07563 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC21.08■□□□□ 0.97
Col17a1Q07563 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC21.08■□□□□ 0.97
Col17a1Q07563 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC21.08■□□□□ 0.97
Col17a1Q07563 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Col17a1Q07563 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC21.08■□□□□ 0.97
Col17a1Q07563 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Col17a1Q07563 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC21.08■□□□□ 0.97
Col17a1Q07563 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col17a1Q07563 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col17a1Q07563 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col17a1Q07563 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col17a1Q07563 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
Col17a1Q07563 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col17a1Q07563 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Col17a1Q07563 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Col17a1Q07563 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Col17a1Q07563 Gm13609-201ENSMUST00000141023 589 ntTSL 3 BASIC21.07■□□□□ 0.96
Col17a1Q07563 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col17a1Q07563 Gm7535-201ENSMUST00000164167 909 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Col17a1Q07563 Rsph14-206ENSMUST00000166088 1203 ntAPPRIS P4 TSL 5 BASIC21.07■□□□□ 0.96
Col17a1Q07563 Rsph14-207ENSMUST00000179546 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col17a1Q07563 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC21.07■□□□□ 0.96
Col17a1Q07563 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC21.07■□□□□ 0.96
Col17a1Q07563 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC21.07■□□□□ 0.96
Col17a1Q07563 Gm45338-201ENSMUST00000209198 820 ntTSL 5 BASIC21.07■□□□□ 0.96
Col17a1Q07563 Gm8712-201ENSMUST00000221090 701 ntBASIC21.07■□□□□ 0.96
Col17a1Q07563 Rsph14-201ENSMUST00000009214 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col17a1Q07563 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
Col17a1Q07563 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col17a1Q07563 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC21.07■□□□□ 0.96
Col17a1Q07563 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col17a1Q07563 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col17a1Q07563 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Col17a1Q07563 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col17a1Q07563 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col17a1Q07563 Myo3b-202ENSMUST00000112241 1319 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col17a1Q07563 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col17a1Q07563 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col17a1Q07563 Gm43399-201ENSMUST00000202546 2374 ntBASIC21.07■□□□□ 0.96
Col17a1Q07563 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Col17a1Q07563 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col17a1Q07563 Gm11801-201ENSMUST00000117807 746 ntBASIC21.07■□□□□ 0.96
Col17a1Q07563 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col17a1Q07563 Gm34023-201ENSMUST00000195539 217 ntBASIC21.07■□□□□ 0.96
Col17a1Q07563 AC107638.1-201ENSMUST00000213690 1061 ntBASIC21.07■□□□□ 0.96
Col17a1Q07563 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC21.07■□□□□ 0.96
Col17a1Q07563 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms