Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Nkx3-1P97436 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC12.12□□□□□ -0.47
Nkx3-1P97436 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Gm37714-201ENSMUST00000194742 342 ntBASIC12.12□□□□□ -0.47
Nkx3-1P97436 AC155258.1-201ENSMUST00000219303 253 ntBASIC12.12□□□□□ -0.47
Nkx3-1P97436 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Nkx3-1P97436 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Nkx3-1P97436 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Mir692-1-201ENSMUST00000102263 109 ntBASIC12.11□□□□□ -0.47
Nkx3-1P97436 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Gm4984-201ENSMUST00000115987 360 ntBASIC12.11□□□□□ -0.47
Nkx3-1P97436 Gm12134-201ENSMUST00000122109 520 ntBASIC12.11□□□□□ -0.47
Nkx3-1P97436 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Gm27892-201ENSMUST00000185017 106 ntBASIC12.11□□□□□ -0.47
Nkx3-1P97436 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Gm44608-201ENSMUST00000206827 855 ntBASIC12.11□□□□□ -0.47
Nkx3-1P97436 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Nkx3-1P97436 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Nkx3-1P97436 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms