Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Cux1P53564 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Cux1P53564 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Cux1P53564 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC21.26■□□□□ 0.99
Cux1P53564 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC21.26■□□□□ 0.99
Cux1P53564 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC21.26■□□□□ 0.99
Cux1P53564 Gm6222-202ENSMUST00000182143 629 ntBASIC21.26■□□□□ 0.99
Cux1P53564 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cux1P53564 Gm3961-201ENSMUST00000204425 994 ntBASIC21.26■□□□□ 0.99
Cux1P53564 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC21.26■□□□□ 0.99
Cux1P53564 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Cux1P53564 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC21.26■□□□□ 0.99
Cux1P53564 Abhd6-203ENSMUST00000225234 1958 ntBASIC21.26■□□□□ 0.99
Cux1P53564 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cux1P53564 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Cux1P53564 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Cux1P53564 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cux1P53564 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Cux1P53564 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cux1P53564 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cux1P53564 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cux1P53564 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cux1P53564 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Cux1P53564 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Cux1P53564 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
Cux1P53564 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Cux1P53564 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cux1P53564 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cux1P53564 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
Cux1P53564 Gm45684-201ENSMUST00000210244 1571 ntBASIC21.25■□□□□ 0.99
Cux1P53564 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cux1P53564 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cux1P53564 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cux1P53564 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cux1P53564 Gm9867-201ENSMUST00000192212 2647 ntBASIC21.25■□□□□ 0.99
Cux1P53564 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cux1P53564 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC21.25■□□□□ 0.99
Cux1P53564 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cux1P53564 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cux1P53564 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Cux1P53564 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cux1P53564 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC21.24■□□□□ 0.99
Cux1P53564 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Cux1P53564 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cux1P53564 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cux1P53564 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Cux1P53564 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Cux1P53564 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC21.24■□□□□ 0.99
Cux1P53564 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cux1P53564 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
Cux1P53564 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cux1P53564 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cux1P53564 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC21.24■□□□□ 0.99
Cux1P53564 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cux1P53564 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Cux1P53564 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC21.24■□□□□ 0.99
Cux1P53564 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC21.24■□□□□ 0.99
Cux1P53564 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Cux1P53564 Gm27243-201ENSMUST00000183964 521 ntBASIC21.24■□□□□ 0.99
Cux1P53564 AC154462.2-201ENSMUST00000227519 370 ntBASIC21.24■□□□□ 0.99
Cux1P53564 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cux1P53564 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cux1P53564 n-R5s195-201ENSMUST00000082891 119 ntBASIC21.24■□□□□ 0.99
Cux1P53564 Gm10268-201ENSMUST00000085340 555 ntBASIC21.24■□□□□ 0.99
Cux1P53564 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cux1P53564 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cux1P53564 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cux1P53564 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC21.23■□□□□ 0.99
Cux1P53564 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cux1P53564 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cux1P53564 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cux1P53564 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cux1P53564 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
Cux1P53564 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cux1P53564 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cux1P53564 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cux1P53564 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Cux1P53564 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Cux1P53564 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cux1P53564 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cux1P53564 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cux1P53564 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Cux1P53564 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Cux1P53564 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cux1P53564 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cux1P53564 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cux1P53564 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cux1P53564 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC21.23■□□□□ 0.99
Cux1P53564 Gm25261-201ENSMUST00000157416 134 ntBASIC21.23■□□□□ 0.99
Cux1P53564 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Cux1P53564 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC21.23■□□□□ 0.99
Cux1P53564 Gm38144-201ENSMUST00000192790 465 ntBASIC21.23■□□□□ 0.99
Cux1P53564 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC21.23■□□□□ 0.99
Cux1P53564 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cux1P53564 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Cux1P53564 CT010478.1-201ENSMUST00000220747 2787 ntBASIC21.23■□□□□ 0.99
Cux1P53564 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC21.23■□□□□ 0.99
Cux1P53564 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cux1P53564 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cux1P53564 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC21.22■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms