Protein–RNA interactions for Protein: P50220

Nkx2-1, Homeobox protein Nkx-2.1, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-1P50220 Eno1b-201ENSMUST00000076155 1757 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx2-1P50220 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx2-1P50220 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx2-1P50220 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
Nkx2-1P50220 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx2-1P50220 Gm15173-201ENSMUST00000122049 433 ntBASIC11.65□□□□□ -0.54
Nkx2-1P50220 Gm11452-201ENSMUST00000122376 690 ntBASIC11.65□□□□□ -0.54
Nkx2-1P50220 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx2-1P50220 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC11.65□□□□□ -0.54
Nkx2-1P50220 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx2-1P50220 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Nkx2-1P50220 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
Nkx2-1P50220 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC11.65□□□□□ -0.54
Nkx2-1P50220 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC11.65□□□□□ -0.54
Nkx2-1P50220 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC11.65□□□□□ -0.54
Nkx2-1P50220 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx2-1P50220 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx2-1P50220 AC147366.1-201ENSMUST00000227671 852 ntBASIC11.65□□□□□ -0.54
Nkx2-1P50220 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx2-1P50220 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx2-1P50220 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC11.65□□□□□ -0.54
Nkx2-1P50220 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx2-1P50220 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx2-1P50220 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx2-1P50220 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Nkx2-1P50220 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
Nkx2-1P50220 Gm14371-201ENSMUST00000138925 1518 ntBASIC11.65□□□□□ -0.55
Nkx2-1P50220 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
Nkx2-1P50220 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Nkx2-1P50220 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Nkx2-1P50220 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.55
Nkx2-1P50220 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.55
Nkx2-1P50220 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Nkx2-1P50220 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.55
Nkx2-1P50220 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.55
Nkx2-1P50220 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
Nkx2-1P50220 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.55
Nkx2-1P50220 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC11.64□□□□□ -0.55
Nkx2-1P50220 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC11.64□□□□□ -0.55
Nkx2-1P50220 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC11.64□□□□□ -0.55
Nkx2-1P50220 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Gm13884-201ENSMUST00000118103 829 ntBASIC11.64□□□□□ -0.55
Nkx2-1P50220 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Gm5864-201ENSMUST00000202263 970 ntBASIC11.64□□□□□ -0.55
Nkx2-1P50220 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC11.64□□□□□ -0.55
Nkx2-1P50220 AV026068-213ENSMUST00000223675 1171 ntBASIC11.64□□□□□ -0.55
Nkx2-1P50220 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Nkx2-1P50220 AC164565.1-201ENSMUST00000217520 1484 ntBASIC11.63□□□□□ -0.55
Nkx2-1P50220 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx2-1P50220 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx2-1P50220 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx2-1P50220 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx2-1P50220 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx2-1P50220 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx2-1P50220 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Nkx2-1P50220 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 70.3 ms